EAF2, an androgen-regulated protein, interacts with members of the ELL (eleven-nineteen lysine-rich leukemia) transcription factor family and also acts as a tumor suppressor. Although these proteins control transcriptional elongation and perhaps modulate the effects of other transcription factors, the mechanisms of their actions remain largely unknown. To gain new insights into the biology of the EAF2 and ELL family proteins, we used Caenorhabditis elegans as a model to explore the in vivo roles of their worm orthologs. Through the use of transgenic worms, RNAi, and an eaf-1 mutant, we found that both genes are expressed in multiple cell types throughout the worm life cycle and that they play important roles in fertility, survival, and body size regulation. ELL-1 and EAF-1 likely contribute to these activities in part through modulating cuticle synthesis, given that we observed a disrupted cuticle structure in ell-1 RNAi-treated or eaf-1 mutant worms. Consistent with disruption of cuticle structure, loss of either ELL-1 or EAF-1 suppressed the rol phenotype of specific collagen mutants, possibly through the control of dpy-3, dpy-13, and sqt-3 collagen gene expression. Furthermore, we also noted the regulation of collagen expression by ELL overexpression in PC3 human prostate cancer cells. Together, these results reveal important roles for the eaf-1 and ell-1 genes in the regulation of extracellular matrix components.Androgens play a key role in prostate development, prostate cancer, and benign prostatic hyperplasia. Thus, identification and characterization of androgen-responsive genes could significantly contribute to the prevention and treatment of prostate cancer and benign prostatic hyperplasia. One such androgen-responsive gene is EAF2 (ELL-associated factor 2), which may serve as a tumor suppressor (1). The EAF2 locus exhibits frequent allelic loss in ϳ80% of advanced clinical prostate cancer specimens, and evidence for homozygous deletion also exists (1). EAF2 deficiency in mice leads to carcinogenesis in multiple tissues (2) as well as aspermatogenesis and reduced survival (3). In addition to EAF2, mammals also express EAF1, a protein that shares 58% identity and 74% similarity with EAF2. Both EAF proteins interact with the ELL family of transcription elongation factors, including ELL, ELL2, and ELL3 (4 -9). ELL has been identified in an array of species, including yeast (10), Drosophila (11), zebrafish (12), mouse (13), and human (14). This widely expressed gene is essential for embryonic development because deletion of ELL in mouse or Drosophila causes embryonic lethality (15,16). ELL also plays an important role in leukemia (8,17). Chromosomal translocation can lead to fusion of ELL with the MLL (multiple lineage leukemia) gene, and the MLL-ELL fusion protein can cause acute myeloid leukemia (8,18).The mechanisms of EAF/ELL action appear to be complex and involve multiple signaling pathways. ELL family proteins interact with RNA polymerase II and act as a transcription elongation factor (4, 19). Eisse...