Interactions between surface and groundwater systems in fractured rock environments, covering large parts of southern Africa, are poorly understood, such that modelling the different water balance components is highly uncertain. Some of these uncertainties are highlighted and attempts are made to resolve them using hypothesis testing with an uncertain ensemble version of the widely used Pitman hydrological model that includes relevant groundwater components. Five study catchments are used to represent many of the major uncertainties in linking surface and groundwater resources, including the relative importance of deep unsaturated zone drainage, the balance between recharge and losses through riparian evapotranspiration and channel transmission losses.The study demonstrates that some uncertainties can be reduced, but this also involves making a number of assumptions about other aspects of a catchment water balance that can be conceptually supported but not completely validated with available data. The remaining uncertainties need to be resolved through improved process quantification and understanding, possibly using environmental tracers.A c c e p t e d M a n u s c r i p t 2
INTRODUCTIONThe interactions between surface water and groundwater (SW/GW) systems remain poorly understood in many catchments throughout the world and yet they are essential to effectively managing the quantity and quality of water resources. It has been well documented that these systems interact in a range of geological, topographical and climatic settings and that many surface water features, such as rivers, lakes, dams and wetlands will have varying degrees of connection with groundwater systems (Ivkovic 2009, Fleckenstein et al. 2010, Haria et al. 2013). There are a number of comprehensive reviews of the current understanding of the physical interactions that occur between groundwater and surface water systems (Winter 1999, Sophocleous 2002, Brunner et al. 2009, Unland et al. 2013, Lamontagne et al. 2014). Within South Africa the focus has tended to be more on management issues surrounding the interactions between surface and groundwater (Xu et al. 2002, Parsons 2004, Le Maitre and Colvin 2008, Hughes 2010, Levy and Xu 2011), while some contributions have focused on the physical processes behind the interactions, albeit through relatively small scale studies (Hughes and Sami 1992, Lorentz et al. 2004, Roets et al. 2008, Wenningger et al. 2008, Kelbe and Germishuyse, 2010). One of the limiting factorsin trying to understand and quantify interaction processes at scales appropriate for regional water resources management is the lack of direct data that is available to quantify almost all of the individual processes, from recharge, through vertical drainage, to the interactions between aquifers and river channels. This is particularly true for fractured rock aquifers that are highly heterogeneous and are the dominant aquifer type in southern Africa. A further limitation is the general lack of availability (for desktop studies at the catchm...