Deep convection is a threat to many human activities, with a great impact on aviation safety. On 7 July 2017, a widespread torrential precipitation event (associated with a cut-off low at mid-levels) was registered in the vicinity of Madrid, causing serious flight disruptions. During this type of episode, accurate short-term forecasts are key to minimizing risks to aviation. The aim of this research is to improve early warning systems by obtaining the best WRF model setup. In this paper, the aforementioned event was simulated. Various model configurations were produced using four different physics parameterizations, 3-km and 1-km domain resolutions, and 0.25° and 1° initial condition resolutions. Simulations were validated using data from 17 rain gauge stations. Two validation indices are proposed, accounting for the temporal behaviour of the model. Results show significant differences between microphysics parameterizations. Validation of domain resolution shows that improvement from 3 to 1 km is negligible. Interestingly, the 0.25° resolution for initial conditions produced poor results compared with 1°. This may be linked to a timing error, because precipitation was simulated further east than observed. The use of ensembles generated by combining different WRF model configurations produced reliable precipitation estimates.