using BSBCA, photocontrol of peptide helicity was achieved. [ 2 ] Azobenzene dimaleimide cross-linkers (e.g., 3 (ABDM)) were described much earlier, not for the purpose of photocontrol, but as cleavable intramolecular linkages used to probe distances between thiols in proteins. [ 3 ] After the discovery of peptide conformational control by ( 1 ), di-maleimide crosslinkers were also tested as peptide and protein photocontrol elements. [ 4 ] ABDM ( 3 ) and analogs have now been used successfully to control structure and function in myosin, in restriction enzymes, in P2X receptor ion channels, and group II chaperonins. [ 5 ] The mechanism by which these azobenzene-based switches control peptide and protein conformation appears to be primarily through the end-to-end distance change that occurs upon isomerization. [ 6 ] Since the number and type of bonds connecting the two sulfur atoms in the target is the same in each case (e.g., for 1 vs 3 ), these compounds should exhibit similar end-to end-distance changes upon isomerization. The relative reactivity and selectivity of maleimides for thiols at neutral pH is reported to be higher than that of haloacetamides, [ 6c ] so that maleimide-based photoswitches would seem to be attractive reagents for complex biological targets. However, a priori, three features originally discouraged us from using the maleimide-based cross-linker ( 3 ) for peptide and protein photocontrol. The fi rst is that thiol addition to a maleimide produces Azobenzene-containing intramolecular cross-linkers with maleimide functional groups (e.g., azobenzene di-maleimide (ABDM)) have been used successfully for photocontrol of protein conformation and activity. However, the ABDM cross-linker requires short wavelength UV light (340 nm) for photoisomerization, which is highly scattered and can be absorbed by biological materials. In addition, the maleimide functional groups of ABDM are expected to lead to a mixture of stereoisomeric products upon crosslinking and these may undergo ring-opening via hydrolysis. This study reports the design and synthesis of a tetraortho -methoxy substituted ABDM crosslinker, which can be photoisomerized using red light (617 nm) and blue light (450 nm), thereby avoiding the use of UV. This new cross-linker is used to cross-link a peptide, 30ER that undergoes helix-coil transitions. As predicted, hydrolyzed succinimide cross-linked products are observed by mass spectrometry. However, although, hydrolyzed products are present, and a mixture of stereoisomers presumably forms, photoisomerization of the cross-linker nevertheless enables control of peptide helical conformation using red light. Thus, azobenzene di-maleimides are practically useful, although chemically ill-defi ned, photoswitchable cross-linkers. Scheme 1. Chemical structures of azobenzene-based thiol-reactive compounds 1 -4 .