The author examines how federal state educational standards of higher education (FSES-HE) and professional standards can be combined. Methods of assessing the effectiveness of students' research activities through the electronic portfolio of students are being developed. The information about the existing forms of organization of research activities of students of bachelor's, specialist's and master's degree programs at the university, the requirements for the effectiveness of research work at each educational level were analyzed. The main result of the work is the positioning of the electronic student portfolio as a modern effective means of monitoring his educational achievements which allow assessing the acquisition of professional competencies by the student, solving the problems of organization, planning, implementation and qualitative/quantitative evaluation of his research activities implemented within the educational process. Pedagogical monitoring is characterized as a modern means of control and evaluating the effectiveness of research activities, ensuring the efficiency and availability of information. The principles of purposefulness and prognostication, objectivity, integrity and continuity, development and self-organization, systematic and consistent implementation of pedagogical monitoring are revealed. The relevance of score-rating evaluation of the effectiveness of research activities of students as the most adequate and demonstrative system for assessing the success of each student in scientific work is substantiated. It is concluded about the stimulating impact on regular pedagogical monitoring of research activities performed through the electronic portfolio of students.