Uric
acid (UA) has an enormous competence to aggregate over melamine
(Mel), producing large UA clusters that “drag” Mel toward
them. Such a combination of donor–acceptor pairs provides a
robust Mel–UA composite, thereby denoting a high complexity.
Thus, a straightforward but pragmatic methodology might indeed require
either destruction of the aggregation of UA or impediment of the hydrogen-bonded
cluster of Mel and UA. Here, potassium citrate (K3Cit)
is used as a potent inhibitor for a significant decrease of large
UA–Mel clusters. The underlying mechanisms of synchronous interactions
between K3Cit and the Mel–UA pair are examined by
the classical molecular dynamics simulation coupled with the enhanced
sampling method. K3Cit binds to the Mel–UA pair
profoundly to produce a Mel–UA–K3Cit complex
with favorable complexation energy (as indicated by the reckoning
of pairwise ΔG
bind° employing
the molecular mechanics Poisson–Boltzmann surface area (MM-PBSA)
method). The strength of interaction follows the order UA–K3Cit > Mel–K3Cit > Mel–UA, thus
clearly
demonstrating the instability caused by upsetting the π-stacking
of UA and hydrogen bonding of Mel–UA simultaneously. The comprehensive,
strategically designed “direct approach” and “indirect
approach” cluster structure analysis shows that K3Cit reduces the direct approach Mel–UA cluster size significantly
irrespective of ensemble variation. Furthermore, the estimation of
potentials of mean force (PMFs) reveals that the (UA)decamer–Mel interaction prevails over (UA)tetramer–Mel.
The dynamic property (dimer existence autocorrelation functions) proves
the essence of dimerization between Mel and UA in the absence and
presence of K3Cit. Moreover, the calculation of the preferential
interaction parameter provides the concentration at which Mel–K3Cit and UA–K3Cit interactions are predominant
over the interaction of Mel and UA.