Japanese encephalitis virus (JEV), a member of the genusFlavivirus in the family Flaviviridae, is the leading cause of endemic/epidemic viral encephalitis in Asia, including India, Thailand, Vietnam, Singapore, the Philippines, Taiwan, China, Korea, and Japan (40). It is also one of several mosquito-borne flaviviruses, in addition to four serotypes of dengue virus (DENV-1 to -4), that have experienced emergence and/or reemergence throughout the world, especially in the tropical regions (22,24). Sequential infection by multiple cocirculating flaviviruses in the affected population confounds serodiagnosis (20), disease burden estimation (23), and the impact on pathogenesis (10).Flavivirus infections elicit protective antibody responses primarily against the envelope (E) glycoprotein (20). The E protein contains three structural and functional domains. E domain I (EDI) is an eight-stranded -barrel; it contains two large insertion loops forming the elongate dimerization EDII and containing the highly conserved internal fusion peptide. EDIII has an immunoglobulin (Ig)-like structure and contains the primary receptor-binding motifs (16,29). Murine monoclonal antibody (MAb) studies have demonstrated that EDI contains predominately type-specific nonneutralizing (non-Nt) epitopes, EDII contains cross-reactive epitopes eliciting both Nt and non-Nt antibodies, and EDIII contains the majority of the type-specific Nt epitopes (6, 31-34, 37, 38).Diagnostic enzyme-linked immunosorbent assays (ELISAs) are common, relatively quick, and efficient assays for clinical diagnosis, traditionally requiring the use of suckling mouse brain-grown (SMB) antigen and more recently utilizing noninfectious recombinant virus-like particle (VLP) antigen. Studies have shown that VLP antigens have higher performance accuracy than SMB antigens when used in ELISA for diagnosing flaviviral infections (8,13,14,28). However, both SMB and VLP antigens contain wild-type (WT) E proteins that exhibit the same cross-reactive epitopes as the virus responsible for the infection. The amino acids located in the highly conserved E glycoprotein fusion peptide, in particular Gly104, Gly106, and Leu107, have been identified as important flavivirus crossreactive epitope determinants (6,7,37,39). Thus, it is possible to develop cross-reactivity-reduced antigens by introducing substitutions for amino acids within the fusion peptide, thereby improving virus-specific diagnostic assays (7, 39). Recently, fusion peptide mutant VLPs for both St. Louis encephalitis virus (SLEV) and West Nile virus (WNV) demonstrated dramatic reductions in the observed cross-reactivity of immunoglobulin M capture (MAC) ELISA, producing more accurate differentiation of both current and past WNV and SLEV infections (30).Here, we present results from mutagenesis in the fusion peptide region of the JEV E protein to identify and ablate cross-reactive E protein epitopes and utilize these mutant VLPs as improved serodiagnostic antigens. The JEV G106K/ L107D (KD) VLP exhibited the most dramatic red...