Frequency dependent differential photoacoustic cross-section (DPACS) over a large frequency band (100–1000 MHz) has been computed and subsequently, morphological parameters of photoacoustic (PA) source have been quantified. Green’s function method has been employed for computing the DPACS for a series of ellipsoidal droplets (with varying aspect ratio), Chebyshev particles (with different waviness (n) and deformation (ϵ) parameters), healthy red blood cell (RBC) and cells suffering from hereditary disorders (spherocytosis, elliptocytosis and stomatocytosis). The tri-axial ellipsoid form factor (TAEFF), finite cylinder form factor (CFF) and toroid form factor (TFF) models have been used to fit the DPACS spectrum to obtain size and shape information of the PA source. The TAEFF model estimates the shape parameters of the ellipsoidal droplets accurately (error < 5%). It is found that volume estimation is better (error < 10%) for lower order (n = 2, ϵ = ± 0.25) and very higher order (n = 35, 45, ϵ = ± 0.05) Chebyshev particles compared to those of n = 4, 6 and ϵ = ± 0.25. The TAEFF model predicts shape parameters of stomatocyte with volume error ≈15% but it is ≤6% for other cells. The opposite trend is observed for the CFF model. The TFF model is able to estimate the shape parameters efficiently for normal erythrocyte and stomatocyte but gives relatively large errors (>15%) for other deformed RBCs. The inverse problem framework may motivate to develop a PA-based technology to assess single cell morphology.