Beehives have previously been used to protect large trees from elephant impact in sub-arid savannas, thus improving the persistence of large trees as habitats for other species. This brief report aimed to investigate the effectiveness of the presence and absence of beehives as a management tool for reducing elephant-induced tree mortality. The study was conducted in three phases: Phase 1 (2015–2020) involved actively maintaining beehives on marula trees (Sclerocarya birrea subsp. caffra), Phase 2 (2020–2022) the systematic reduction in the number of active beehives, and Phase 3 (2022–2024) the removal of all beehives. The persistence rates of the trees with beehives were compared to those without beehives. We found that beehives significantly improved the persistence of the trees in the presence of elephants. During Phase 1, only 10% of the trees with beehives died compared to 34% of the trees with no beehives. In Phase 2, with a reduced number of active beehives, the mortality rates increased slightly for both trees with beehives and those without. However, in Phase 3, after the removal of all the beehives, the mortality rates significantly increased for all the trees monitored as part of the study. We also found that the mortality rate of the original trees with no beehives increased when beehives were removed from the study site, whilst the mortality rate of the original beehive trees without beehives in Phase 3 (8.7%) surpassed that of the 8.1% prior to the hanging of beehives. These findings highlight the effectiveness of beehives as a tree protection method against elephant impact and how beehives can improve the persistence of tree populations co-occurring with elephants.