Mutants of Salmonella enterica serovar Typhimurium that lack the transcriptional regulator RfaH are efficient as live oral vaccines against salmonellosis in mice. We show that the attenuation of the vaccine candidate strain is associated with reduced net growth in epithelial and macrophage cells. In order to identify the relevant RfaH-dependent genes, the RfaH regulon was determined with S. enterica serovars Enteritidis and Typhimurium using whole-genome Salmonella microarrays. As well as impacting the expression of genes involved in lipopolysaccharide (LPS) core and O-antigen synthesis, the loss of RfaH results in a marked down-regulation of SPI-4 genes, the flagellum/chemotaxis system, and type III secretion system 1. However, a proportion of these effects could have been the indirect consequence of the altered expression of genes required for LPS biosynthesis. Direct and indirect effects of the rfaH mutation were dissociated by genome-wide transcriptional profiling of a structural deep-rough LPS mutant (waaG). We show that truncation of LPS itself is responsible for the decreased intracellular yield observed for ⌬rfaH strains. LPS mutants do not differ in replication ability; rather, they show increased susceptibility to antimicrobial peptides in the intracellular milieu. On the other hand, evidence that deletion of rfaH, as well as some other genes involved in LPS biosynthesis, results in enhanced invasion of various mammalian cells is shown. Exposure of common minor antigens in the absence of serovar-specific antigens might be responsible for the observed cross-reactive nature of the elicited immune response upon vaccination. Increased invasiveness of the Salmonella rfaH mutant into antigen-presenting cells, combined with increased intracellular killing and the potential for raising a crossprotective immune response, renders the rfaH mutant an ideal vaccine candidate.Salmonella enterica can cause various diseases in humans and a wide variety of farm animals. Currently available vaccines do not confer optimal protection against Salmonella infection, and so development of effective vaccines is still a high priority (for a recent review, see reference 22). Currently, over 2,500 serovariants of S. enterica have been distinguished, based on the high polymorphism of lipopolysaccharide (LPS) O antigens and flagellar antigens. Immune cross-protection between serovariants of S. enterica is limited, hindering development of an efficacious broad-spectrum Salmonella vaccine. Recently, we reported that an attenuated mutant of S. enterica serovar Typhimurium strain SL1344 that lacks the transcriptional regulator RfaH was capable of eliciting protection against subsequent challenge by wild-type Salmonella in the mouse model of typhoid fever (41). Furthermore, sera of vaccinated mice were shown to cross-react to not only the isogenic wild-type strain but also heterologous serovariants of S. enterica and even Salmonella bongori.Transcriptional antitermination is a conserved mechanism of gene regulation based on overcoming i...