Variations on Sprouting Time and Classification by RAPD Analysis of Allium victorialis L. Clones Collected from Diverse Habitats

Inatomi, Yoshihiro; Murata, Naho; Nakano, H.; Tamura, Haruto; Suzuki, Takashi; Oosawa, Katsuji

doi:10.2503/hrj.3.329

Cited by 4 publications

(1 citation statement)

References 8 publications

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“…Although previous molecular genetics studies have investigated the intraspecific genetic diversity of A. victorialis or interspecific genetic diversity between A. victorialis and other Allium species, the focus of these studies was mainly on A. victorialis in regions such as Japan, Korea, Europe, and North America (Lim et al 1998 ; Inatomi et al 2004 ; Herden et al 2016 ). Thus far, studies on the molecular genetics of A. victorialis from the Changbai Mountains have not yet been reported.…”

Section: Discussionmentioning

confidence: 99%

Transcriptome analysis and genetic diversity of Allium victorialis germplasms from the Changbai Mountains

Feng

Wang²,

Chen

et al. 2021

Mitochondrial DNA Part B

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The Changbai Mountains comprise one of the main distribution areas of A. victorialis in China, and this species is endangered owing to habitat changes and overexploitation. However, A. victorialis germplasms have not been systematically collected and studied. The aims of this study were to obtain some detailed genetic information, analyze the genetic diversity, and further promote the protection of A. victorialis germplasms from the Changbai Mountains. Transcriptomic analysis was performed with six A. victorialis samples collected from the Changbai Mountains. At least 146,759 genes for each sample were obtained after performing de novo assembly of the RNA-seq data, and at least 92% of these genes were found to have only one mRNA isoform. These sequences and their functional annotations provided a large-scale genetic resource of this species. Phylogenetic analysis showed that A. victorialis was genetically distant from some related species, e.g. Allium sativum , Allium fistulosum , and Allium cepa , but genetically close to Allium tuberosum . The two A. victorialis var. listera samples were phylogenetically separated from the other four samples, and these two samples should be regarded as Allium listera . In addition, two KASP markers for discriminating the Dongfeng samples from the other four A . victorialis samples were successfully developed. This study lays the foundation for future studies on the genetic diversity and evolution of Allium species, as well as for the conservation of A. victorialis germplasms from the Changbai Mountains and other populations of this species.

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Section: Discussionmentioning

confidence: 99%

Transcriptome analysis and genetic diversity of Allium victorialis germplasms from the Changbai Mountains

Feng

Wang²,

Chen

et al. 2021

Mitochondrial DNA Part B

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Phylogenetic Differences in Morphological Traits of Allium victorialis L. subsp. platyphyllum Hulten

Tsuge

Yanagisawa²,

Motoki

2020

Engeigaku kenkyuu

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Phylogenetic Analysis of Local Japanese Chili Pepper (Capsicum annuum) Varieties Using RAPD

et al. 2022

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Fifty-two local Japanese chili pepper varieties (Capsicum annuum) were subjected to polymorphism analysis using the RAPD method to analyze their genetic relationships. The phylogenetic tree based on the UPGMA method was classified into five clusters (I-V) with two subclusters in cluster IV. Clusters I and II consisted of four varieties from the 'Fushimi' variety group in Kyoto and 'Kenzaki Namban' from Ishikawa, cluster III consisted of upward-fruiting varieties for spice, and subcluster IV-a consisted of varieties developed for ornamental use and varieties with characteristic fruit colors, while sub-cluster IV-b, which consisted of the largest number of cultivars, was composed of a mixture of various fruit types. The remaining cluster V was composed of bell-blocky type large-fruited varieties. As the result, analogical and genetic relationships of Japanese local chili pepper varieties were revealed, and some of them were consistent with historical facts in the literature.

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Variations on Sprouting Time and Classification by RAPD Analysis of Allium victorialis L. Clones Collected from Diverse Habitats

Cited by 4 publications

References 8 publications

Transcriptome analysis and genetic diversity of Allium victorialis germplasms from the Changbai Mountains

Transcriptome analysis and genetic diversity of Allium victorialis germplasms from the Changbai Mountains

Phylogenetic Differences in Morphological Traits of <i>Allium victorialis</i> L. subsp. <i>platyphyllum</i> Hulten

Phylogenetic Analysis of Local Japanese Chili Pepper (<i>Capsicum annuum</i>) Varieties Using RAPD

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