Aiming at the low simulation accuracy of the numerical simulation method of the joint response of the super-large section underground comprehensive pipeline gallery under the current complicated geological conditions, a numerical simulation method of the joint response of the super-large section underground comprehensive pipe gallery joint response under the complicated geological conditions based on the finite element model was proposed. According to the analysis process for the super-large section underground comprehensive pipe gallery, the viscous boundary of the comprehensive pipe gallery is determined. Additionally, by analyzing soil and structural parameters, the optimal combined dynamic boundary is used as the model boundary. The HSS model is used to describe the constitutive structure of the soil, and by improving the Goodman element to describe the contact surface of the model, the finite element model of the joint response of the comprehensive pipe gallery is constructed. Furthermore, based on the internal force balance and deformation coordination conditions, considering the influence of the deformation shape of the joint joints and the elongation of the prestressed tendons on the finite element model, the response model of the integrated pipe gallery joint is optimized. Experimental results show that the proposed method has higher numerical simulation accuracy.