With the rise of electric vehicles, the use of battery modules, which are key units that drive vehicles, is increasing. The battery housing is the final form of a battery system mounted on electric vehicles, and is generally made of aluminum alloys, located at the bottom of the vehicle. The aluminum housing has a special shape to accommodate the battery module and is produced by welding extruded panels. This study applied friction stir welding (FSW) to weld 2.5 mm thin aluminum plates in order to improve the weldability and productivity. To increase productivity, we compared the mechanical properties after performing experiments under various FSW conditions. As a result, it was possible to derive speed-enabling welding conditions that can improve productivity without decreasing tensile strength. Deformation occurred in the structure during welding, causing gaps in the structure. Since these gaps have a significant influence on the degradation of mechanical properties after welding, the welding deformation at each step of welding must be calculated and reflected in the process. This study used the inherent strain method to calculate the deformation of each step of welding to apply automatic welding, and reduced the analysis time to 1/30 compared to the thermal elasto-plastic analysis method. Finally, this study verified the validity of the analysis method by comparing the experimental results with the numerical results using the inherent strain method. validation, S.K. and K.L.; formal analysis, S.K.; investigation, S.K. and Y.J.; resources, S.K. and K.L.; data curation, S.K. and K.L.; writing-original draft preparation, S.K.; writing-reviewing and editing, Y.J. and K.L.; visualization, S.K.; supervision, K.L.; project administration, K.L.; funding acquisition, K.L.