Gas leakage from geologic carbon storage sites could undermine the long‐term goal of reducing emissions to the atmosphere and negatively impact groundwater resources. Despite this, there remain uncertainties associated with the transport processes that would govern this leakage. These stem from the complex interaction between governing forces (e.g., gravitational, viscous, and capillary), the heterogeneous nature of the porous media, and the characteristic length scales of these leakage events, all of which impact the CO2 fluid flow processes. Here we assessed how sub‐basin‐scale horizons in porous media could impact the migration and trapping of a CO2 plume. A high‐pressure column packed with two layers of sand with different properties (e.g., grain size and wettability) was used to create a low‐contrast stratigraphic horizon. CO2 in supercritical or liquid phase was injected into the bottom of the column under various conditions (e.g., temperature, pressure, and capillary number) and the transport of the resulting plume was recorded using electrical resistivity. The results show that CO2 trapping was most strongly impacted by shifting the wettability balance to mixed‐wet conditions, particularly for residual saturation. A 16% increase in the cosine of the contact angle for a mixed‐wet sand resulted in nearly twice as much residual trapping. Permeability contrast, pressure, and temperature also impacted the residual saturation but to a lesser extent. Flow rate affected the dynamics of saturation profile development, but the effect is transient, suggesting that the other effects observed here could apply to a broad range of leakage conditions.