1. The persistence of phytoplanktonic diversity in spite of competition for basic resources has long been a source of wonder and inspiration to ecologists. To sort out, among the many coexistence mechanisms suggested by theory and experiments, which ones actually maintain diversity in natural ecosystems, long-term field studies are paramount. 2. We analysed a large dataset of phytoplankton abundance time series using dynamic, multivariate autoregressive (MAR) models. Phytoplankton was counted and identified down to the genus level, every 2 weeks over 20 years, at 10 sites along the French coastline. MAR models allowed to estimate biotic interaction networks while also accounting for abiotic variables that may drive part of the phytoplankton fluctuations. We then analysed the ratio of intra to intertaxa interactions (a measure of niche differentiation), the frequency of negative versus positive interactions, and how stability metrics (both at the network and genus level) relate to network complexity and genus self-regulation or abundance. 3. We showed that a strong self-regulation, with competition strength within a taxon (genus) an order of magnitude higher than between taxa, was present in all phytoplanktonic interaction networks. This much stronger intragenus competition suggests that niche differentiation-rather than neutrality-is commonplace in phytoplankton. Furthermore, interaction networks were dominated by positive net effects between phytoplanktonic taxa (on average, more than 50% of interactions were positive). While network stability (sensu resilience) was unrelated to complexity measures, we unveiled links between self-regulation, intergenera interaction strengths and abundance. The less common taxa tend to be more strongly self-regulated and can therefore maintain in spite of competition with more abundant ones. 4. Synthesis. We demonstrate that strong niche differentiation, widespread facilitation between phytoplanktonic taxa and stabilizing covariances between interaction strengths should be common features of coexisting phytoplankton communities in the field. These are structural properties that we can expect to emerge from plausible mechanistic models of phytoplankton communities. We discuss mechanisms, such as predation or restricted microscale movement, that are consistent with these findings, which paves the way for further research.