Abstract-The performance of some emerging nanotechnologies benefits from wave pipelining. The design of such circuits requires new models and algorithms. Thus we show how MajorityInverter Graphs (MIG) can be used for this purpose and we extend the related optimization algorithms. The resulting designs have increased throughput, something that has traditionally been a weak point for the majority of non-charge-based technologies. We benchmark the algorithm on MIG netlists with three different technologies, Spin Wave Devices (SWD), Quantum-dot Cellular Automata (QCA), and NanoMagnetic Logic (NML). We find that the wave pipelined version of the netlists have an improvement in throughput over power of 23×, 13×, and 5× for SWD, QCA, and NML, respectively. In terms of throughput over area ratio, the improvement is 5×, 8×, and 3×, respectively.