Membrane proteins are vital mediating molecules responsible for the interaction of a cell with its surroundings. These proteins are involved in different functionalities such as ferrying of molecules and nutrients across membrane, recognizing foreign bodies, receiving outside signals and translating them into the cell. Membrane proteins play significant role in drug interaction as nearly 50% of the drug targets are membrane proteins. Due to the momentous role of membrane protein in cell activity, computational models able to predict membrane protein with accurate measures bears indispensable importance. The conventional experimental methods used for annotating membrane proteins are time-consuming and costly and in some cases impossible. Computationally intelligent techniques have emerged to be as a useful resource in the automation of prediction and hence the annotation process. In this study, various techniques have been reviewed that are based on different computational intelligence models used for prediction process. These techniques were formulated by different researchers and were further evaluated to provide a comparative analysis. Analysis shows that the usage of support vector machine-based prediction techniques bears more assiduous results.
The most expedient unit of the human body is its cell. Encapsulated within the cell are many infinitesimal entities and molecules which are protected by a cell membrane. The proteins that are associated with this lipid based bilayer cell membrane are known as membrane proteins and are considered to play a significant role. These membrane proteins exhibit their effect in cellular activities inside and outside of the cell. According to the scientists in pharmaceutical organizations, these membrane proteins perform key task in drug interactions. In this study, a technique is presented that is based on various computationally intelligent methods used for the prediction of membrane protein without the experimental use of mass spectrometry. Statistical moments were used to extract features and furthermore a Multilayer Neural Network was trained using backpropagation for the prediction of membrane proteins. Results show that the proposed technique performs better than existing methodologies.
For many biological functions membrane proteins (MPs) are considered crucial. Due to this nature of MPs, many pharmaceutical agents have reflected them as attractive targets. It bears indispensable importance that MPs are predicted with accurate measures using effective and efficient computational models (CMs). Annotation of MPs using in vitro analytical techniques is time-consuming and expensive; and in some cases, it can prove to be intractable. Due to this scenario, automated prediction and annotation of MPs through CM based techniques have appeared to be useful. Based on the use of computational intelligence and statistical moments based feature set, an MP prediction framework is proposed. Furthermore, the previously used dataset has been enhanced by incorporating new MPs from the latest release of UniProtKB. Rigorous experimentation proves that the use of statistical moments with a multilayer neural network, trained using back-propagation based prediction techniques allows more thorough results.
Cancerlectins are significantly important group of lectins that have an inhibitory effect on cancer cells with respect to their growth. They have a vital role in various tumor cell interactions like adhesion, growth, metastasis, differentiation and mainly in cellular infection. The investigations associated with cancerlectins are applicable to relevant studies in laboratories, diagnostics and therapy in clinical applications, and drug discoveries in targeting cancers. Prediction of cancerlectins is considered a helpful task due to the fact that they are specifically useful in dissecting cancers. Although, several Bioinformatics tools have been developed to predict cancerlectins, however, the need for improvement in the quality of its prediction model requires enhancements in the annotation and determination process of cancerlectins. In this study, a new model is proposed that builds on statistical moments based features to distinguish cancerlectins from non-cancerlectins. The currently proposed model achieved an accuracy of 88.36% using jackknife test which is better than current state-of-the-art models. These outcomes suggest that the use of statistical moments could bear more effective and efficient results. For the accessibility of the scientific community, a user-friendly web server has been developed which will associate the researchers in medical science. Web server is freely accessible at https://www.biopred.org/canlect. INDEX TERMS Cancerlectins, Hahn moments, lectins, moment invariants, PRIM.
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