A study was conducted to evaluate the probiotic effect of Pediococcus acidilactici MA18/5M on rainbow trout, Oncorhynchus mykiss. Fish (310 ± 9 g) were fed a control diet or a P. acidilactici‐supplemented diet (at 2.4 × 106 CFU/g) for 4 weeks. The probiotic was observed to populate the intestine with levels ranging from log 3.7 to 5.4 CFU/g. Furthermore, these populations were able to persist for at least 24 hr after the cessation of probiotic feeding. High‐throughput sequencing analysis of bacterial 16S rRNA libraries demonstrated that P. acidilactici was able to modulate the gut microbiome of rainbow trout and that the probiotic was detected as a common taxon on the mucosa and in the digesta of the probiotic fish (p < .05). Real‐time polymerase chain reaction demonstrated that feeding the probiotic upregulated pro‐inflammatory cytokines, interleukin‐1β, and interleukin‐8 and downregulated anti‐inflammatory interleukin‐10 compared to the control‐fed fish. Furthermore, the mRNA levels for the mucosal antibody immunoglobulin T was also elevated in probiotic‐fed fish. These findings help to explain some of the mechanisms behind the previously reported observed benefits of using this probiotic in the intestinal morphology and immunity of rainbow trout.

A study was conducted to characterize the autochthonous gut microbiota present in the pyloric caeca (PC), anterior mucosa (AM) and posterior mucosa (PM) of brown trout (Salmo trutta). Total viable counts (TVC) bacterial populations were enumerated using tryptone soy agar, lactic acid bacteria (LAB) levels were enumerated on de Man, Rogosa & Sharpe agar and PCR-DGGE was employed as a culture-independent method to assess the total communities. No significant differences were observed between the different gut regions for TVC or LAB levels. 16S rRNA sequencing identified all LAB isolates as Carnobacterium maltaromaticum. In contrast, the TVC community was more diverse; Firmicutes and Bacteroidetes were present but all gut regions were dominated by Proteobacteria, accounting for 88.4-92.6% of the communities. Citrobacter freundii was the dominant species and accounted for 51.0-57.8% of the isolates. Complex bacterial communities were observed using PCR-DGGE and a trend towards the reduction in the number of operational taxonomic units (OTUs), microbial richness and microbial diversity was observed from the PC to the PM. The similarity between regions was low (52-68%) and cluster analysis revealed that the communities grouped into two distinct clusters; one dominated by the PM samples and the other contained the AM and PC samples. OTUs from the DGGE were identified as members of the phyla Proteobacteria and Firmicutes. Many OTUs were detected in all gastrointestinal regions, however, some OTUs showed regional specialization. Further studies are required to elucidate the activity of these genera in situ and how their actions impact the host.

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