Atomic charges are critical quantities in molecular mechanics and molecular dynamics, but obtaining these quantities requires heuristic choices based on atom-typing or relatively expensive quantum mechanical methods to generate a density to be partitioned. Most machine learning efforts in this domain ignore total molecular charges, relying on overfitting and arbitrary rescaling in order to match the total system charge.Here we introduce the electron-passing neural network (EPNN), a fast, accurate neural network atomic charge partitioning model that conserves total molecular charge by construction. EPNNs predict atomic charges very similar to those obtained by partitioning quantum mechanical densities, but at such a small fraction of the cost that they 1 can be easily computed for large biomolecules. Charges from this method may be used directly for molecular mechanics, as features for cheminformatics, or as input to any neural network potential.
We present the working equations for a reduced-scaling
method of
evaluating the perturbative triples (T) energy in coupled-cluster
theory, through the tensor hypercontraction (THC) of the triples amplitudes
(t
ijk
abc
). Through our method,
we can reduce the scaling of the (T) energy from the traditional
scriptO
(
N
7
)
to a more modest
scriptO
(
N
5
)
. We also discuss implementation details
to aid future research, development, and software realization of this
method. Additionally, we show that this method yields submillihartree
(mEh) differences from CCSD(T) when evaluating absolute energies and
sub-0.1 kcal/mol energy differences when evaluating relative energies.
Finally, we demonstrate that this method converges to the true CCSD(T)
energy through the systematic increasing of the rank or eigenvalue
tolerance of the orthogonal projector, as well as exhibiting sublinear
to linear error growth with respect to system size.
Atomic charges are critical quantities in molecular mechanics and molecular dynamics, but obtaining these quantities requires heuristic choices based on atom-typing or
relatively expensive quantum mechanical methods to generate a density to be partitioned. Most machine learning efforts in this domain ignore total molecular charges,
relying on overfitting and arbitrary rescaling in order to match the total system charge.
Here we introduce the electron-passing neural network (EPNN), a fast, accurate neural network atomic charge partitioning model that conserves total molecular charge by
construction. EPNNs predict atomic charges very similar to those obtained by partitioning quantum mechanical densities, but at such a small fraction of the cost that they can be easily computed for large biomolecules. Charges from this method may be used
directly for molecular mechanics, as features for cheminformatics, or as input to any
neural network potential.<br>
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