Finite element method simulations have been carried out on the photonic nanojet (PNJ) mediated surface enhanced Raman scattering (SERS) technique for the first time, and this technique has been found to provide (i) better Raman scattering enhancement of single molecules and (ii) a long working distance between the microscopic objective lens and sample, as compared with the conventional SERS technique. A PNJ mediated surface enhanced fluorescence (SEF) technique has been proposed to enhance the fluorescence of single molecules using the combination of localized surface plasmons inside nanostructures and the PNJ of a dielectric microsphere (MS), and this technique is numerically proved to be efficient as compared with a conventional SEF technique. Moreover, the generation of a PNJ from single lollipop shaped microstructures and its applications in the above mentioned techniques have been reported.