A novel PCR-based restriction fragment length polymorphism analysis of the Brachyspira nox gene was developed. The restriction patterns for Brachyspira hyodysenteriae, B. pilosicoli, B. intermedia, B. murdochii, and B. innocens were highly distinct with two restriction endonucleases only. The assay proved to be user-friendly and robust.The porcine intestinal tract is frequently colonized by different Brachyspira species. Brachyspira hyodysenteriae is the causative agent of swine dysentery, and B. pilosicoli causes intestinal spirochetosis (9). The other species, namely, B. intermedia, B. murdochii, and B. innocens, are considered nonpathogenic (9). Due to differences in pathogenicity (9) and the zoonotic potential of B. pilosicoli (15), rapid and user-friendly differentiation between species is important with respect to the economic use of medication, preharvest food safety, and animal trade.Currently, porcine Brachyspira isolates are differentiated based on phenotypic criteria, including intensity of hemolysis, indole production, hippurate hydrolysis, and activities of ␣-galactosidase, ␣-glucosidase, and -glucosidase (6, 14). In addition, a positive ring phenomenon is indicative of B. hyodysenteriae (11). Due to variable results in these tests and difficulty in correctly assessing the intensity of hemolysis, it seems desirable to replace phenotypic identification schemes with genotypic methods. The currently used sequencing analyses of 16S or 23S ribosomal DNA (rDNA), the nox gene, or unidentified DNA segments or PCR methods based on these data (1,4,5,10,12,13) either are not practical for routine veterinary diagnostic purposes or are confined to the identification of selected species only. Therefore, the purpose of the present study was to develop a robust and user-friendly method for the identification of all porcine Brachyspira species and to evaluate its performance in routine diagnostic work.