In Central Kalimantan, Indonesia, the water of lakes and rivers showed high dissolved organic carbon (DOC) concentration, 5-50 mg C/l. There was a clear relationship between DOC concentration and pH. DOC also contributed to low water transparency in the studied lakes. Water colors measured by spectrophotometer showed a strong relationship with DOC concentration, indicating high applicability of water color measurement for estimation of DOC. The development of a simple but quick estimation of DOC will contribute to understanding the seasonal dynamics of DOC, which might regulate both abiotic and biotic conditions in aquatic ecosystems in this area.
The green microalga Botryococcus braunii produces hydrocarbon oils at 25–75% of its dry weight and is a promising source of biofuel feedstock. Few studies have examined this species’ ecology in natural habitats, and few wild genetic resources have been collected due to difficulties caused by its low abundance in nature. This study aimed to develop a real-time PCR assay for specific detection and quantification of this alga in natural environments and to quantify spatiotemporal variations of wild B. braunii populations in a tropical pond. We designed PCR primers toward the hydrocarbon biosynthesis gene SSL-3 and examined amplification specificity and PCR efficiency with 70 wild strains newly isolated from various environments. The results demonstrated that this PCR assay specifically amplified B. braunii DNA, especially that of B-race strains, and can be widely used to detect wild B. braunii strains in temperate and tropical habitats. Field-testing in a tropical pond suggested a diurnal change in the abundance of B. braunii in surface water and found B. braunii not only in surface water, but also at 1–1.5 m deep and in bottom sediments. This method can contribute to efficient genetic resource exploitations and may also help elucidate the unknown ecology of B. braunii.
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