In this study, we explored the application of a yeast three-hybrid (Y3H)-based compound/protein display system to scanning the proteome for targets of kinase inhibitors. Various known cyclin-dependent kinase (CDK) inhibitors, including purine and indenopyrazole analogs, were displayed in the form of methotrexate-based hybrid ligands and deployed in cDNA library or yeast cell array-based screening formats. For all inhibitors, known cell cycle CDKs as well as novel candidate CDK-like and/or CDK-unrelated kinase targets could be identified, many of which were independently confirmed using secondary enzyme assays and affinity chromatography. The Y3H system described here may prove generally useful in the discovery of candidate drug targets.
p300
and its paralog CBP can acetylate histones and other proteins
and have been implicated in a number of diseases characterized by
aberrant gene activation, such as cancer. A novel, highly selective,
orally bioavailable histone acetyltransferase (HAT) domain inhibitor
has been identified through virtual ligand screening and subsequent
optimization of a unique hydantoin screening hit. Conformational restraint
in the form of a spirocyclization followed by substitution with a
urea led to a significant improvement in potency. Replacement of the
hydantoin moiety with an oxazolidinedione followed by fluoro substitution
led to A-485, which exhibits potent cell activity, low
clearance, and high oral bioavailability.
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