Chalcone isomerase (CHI) is a key enzyme in the biosynthesis of flavonoids in plants. The first bacterial CHI (CHI era ) was identified from Eubacterium ramulus, but its distribution, evolutionary source, substrate scope, and stereoselectivity are still unclear. Here, we describe the identification of 66 novel bacterial CHIs from Genbank using a novel Sequence-Structure-Function-Evolution (SSFE) strategy. These novel bacterial CHIs show diversity in substrate specificity towards various hydroxylated and methoxylated chalcones. The mutagenesis of CHI era according to the substrate binding models of these novel bacterial CHIs resulted in several variants with greatly improved activity towards these chalcones. Furthermore, the preparative scale conversion catalyzed by bacterial CHIs has been performed for five chalcones and revealed (S)-selectivity with up to 96 % ee, which provides an alternative biocatalytic route for the synthesis of (S)-flavanones in high yields.Nature produces an enormous variety of biomolecules, among which flavonoids are a large class of secondary metabolites mainly derived from plants. Flavonoids have many functions in plants, such as flower coloration, UV filtration, symbiotic nitrogen fixation, and floral pigmentation. In addition, they also act as chemical messengers, physiological regulators, cell cycle inhibitors, and antibiotics against plant diseases. [1] In our long history of using medicinal[*] B.
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