A Crop Growth Model (CGM) is used to demonstrate a biophysical framework for predicting grain yield outcomes for Genotype by Environment by Management (G×E×M) scenarios. This required development of a CGM to encode contributions of genetic and environmental determinants of biophysical processes that influence key resource (radiation, water, nutrients) use and yield-productivity within the context of the target agricultural system. Prediction of water-driven yield-productivity of maize for a wide range of G×E×M scenarios in the U.S. corn-belt is used as a case study to demonstrate applications of the framework. Three experimental evaluations are conducted to test predictions of G×E×M yield expectations derived from the framework: (1) A maize hybrid genetic gain study, (2) A maize yield potential study, and (3)A maize drought study. Examples of convergence between key G×E×M predictions from the CGM and the results of the empirical studies are demonstrated. Potential applications of the prediction framework for design of integrated crop improvement strategies are discussed. The prediction framework opens new opportunities for rapid design and testing of novel crop improvement strategies based on an integrated understanding of G×E×M interactions. Importantly the CGM ensures that the yield predictions for the G×E×M scenarios are grounded in the biophysical properties and limits of predictability for the crop system. The identification and delivery of novel pathways to improved crop productivity can be accelerated through use of the proposed framework to design crop improvement strategies that integrate genetic gains from breeding and crop management strategies that reduce yield gaps.
The potential to add significant value to the rapid advances in plant breeding technologies associated with statistical whole-genome prediction methods is a new frontier for crop physiology and modelling. Yield advance by genetic improvement continues to require prediction of phenotype based on genotype, and this remains challenging for complex traits despite recent advances in genotyping and phenotyping. Crop models that capture physiological knowledge and can robustly predict phenotypic consequences of genotype-by-environment-by-management (G×E×M) interactions have demonstrated potential as an integrating tool. But does this biological reality come with a degree of complexity that restricts applicability in crop improvement? Simple, high-speed, parsimonious models are required for dealing with the thousands of genotypes and environment combinations in modern breeding programs utilizing genomic prediction technologies. In contrast, it is often considered that greater model complexity is needed to evaluate potential of putative variation in specific traits in target environments as knowledge on their underpinning biology advances. Is this a contradiction leading to divergent futures? Here it is argued that biological reality and parsimony do not need to be independent and perhaps should not be. Models structured to readily allow variation in the biological level of process algorithms, while using coding and computational advances to facilitate high-speed simulation, could well provide the structure needed for the next generation of crop models needed to support and enhance advances in crop improvement technologies. Beyond that, the trans-scale and transdisciplinary dialogue among scientists that will be required to construct such models effectively is considered to be at least as important as the models.
Key message Climate change and Genotype-by-Environment-by-Management interactions together challenge our strategies for crop improvement. Research to advance prediction methods for breeding and agronomy is opening new opportunities to tackle these challenges and overcome on-farm crop productivity yield-gaps through design of responsive crop improvement strategies. Abstract Genotype-by-Environment-by-Management (G × E × M) interactions underpin many aspects of crop productivity. An important question for crop improvement is “How can breeders and agronomists effectively explore the diverse opportunities within the high dimensionality of the complex G × E × M factorial to achieve sustainable improvements in crop productivity?” Whenever G × E × M interactions make important contributions to attainment of crop productivity, we should consider how to design crop improvement strategies that can explore the potential space of G × E × M possibilities, reveal the interesting Genotype–Management (G–M) technology opportunities for the Target Population of Environments (TPE), and enable the practical exploitation of the associated improved levels of crop productivity under on-farm conditions. Climate change adds additional layers of complexity and uncertainty to this challenge, by introducing directional changes in the environmental dimension of the G × E × M factorial. These directional changes have the potential to create further conditional changes in the contributions of the genetic and management dimensions to future crop productivity. Therefore, in the presence of G × E × M interactions and climate change, the challenge for both breeders and agronomists is to co-design new G–M technologies for a non-stationary TPE. Understanding these conditional changes in crop productivity through the relevant sciences for each dimension, Genotype, Environment, and Management, creates opportunities to predict novel G–M technology combinations suitable to achieve sustainable crop productivity and global food security targets for the likely climate change scenarios. Here we consider critical foundations required for any prediction framework that aims to move us from the current unprepared state of describing G × E × M outcomes to a future responsive state equipped to predict the crop productivity consequences of G–M technology combinations for the range of environmental conditions expected for a complex, non-stationary TPE under the influences of climate change.
Studies at a regional scale suggest that although maize (Zea mays L.) yield increased substantially, sensitivity to water deficit also increased concurrently with crop improvement. This study assessed changes in yield and yield stability after two decades of breeding by evaluating two cohorts of hybrids released by the AQUAmax program and comparing them to a non‐AQUAmax control. Studies were conducted in 2019 and 2020 seasons at four sites under well‐watered, moderate and severe stress conditions. Plant densities varied from 2.5 to 12.5 pl m−2. AQUAmax hybrids yielded more than non‐AQUAmax hybrids under water deficit conditions with the magnitude of the difference dependent on plant density. The sensitivity in yield across environments with a wide range of total crop evapotranspiration (350–800 mm) was lower for AQUAmax than non‐AQUAmax, so both yield and yield under stress conditions (yield stability), were enhanced for AQUAmax hybrids. The median differences between observed yields and the 80% quantile yield–evapotranspiration front were 379 for AQUAmax and 427 g m−2 for non‐AQUAmax hybrids. We conclude that deliberate selection of hybrids for yield performance under water deficit underpinned the sustained improvement in yield stability after two decades of drought breeding. Future research should focus on understanding the root causes for the suboptimal utilization of drought tolerant maize for the diversity of environments at a regional scale.
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