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Background The wide variety of specialized permissive and repressive mechanisms by which germ cells regulate developmental gene expression are not well understood genome-wide. Isolation of germ cells with high integrity and purity from living animals is necessary to address these open questions, but no straightforward methods are currently available. Results Here we present an experimental paradigm that permits the isolation of nuclei from C. elegans germ cells at quantities sufficient for genomic analyses. We demonstrate that these nuclei represent a very pure population and are suitable for both transcriptome analysis (RNA-seq) and chromatin immunoprecipitation (ChIP-seq) of histone modifications. From these data, we find unexpected germline- and soma-specific patterns of gene regulation. Conclusions This new capacity removes a major barrier in the field to dissect gene expression mechanisms in the germ line of C. elegans . Consequent discoveries using this technology will be relevant to conserved regulatory mechanisms across species. Electronic supplementary material The online version of this article (10.1186/s12864-019-5893-9) contains supplementary material, which is available to authorized users.

Laser‐induced breakdown spectroscopy (LIBS) records light emitted from the decay of electrons to lower‐energy orbitals during cooling of laser‐induced ablation plasmas; the resultant spectra can be used in a variety of geoanalytical applications. Four aspects of LIBS analysis distinguish LIBS from traditional laboratory‐based analytical techniques: (i) the lack of necessary sample preparation, allowing rapid analysis of many samples, (ii) the ability to analyse both 20 to 100 μm‐diameter spots and whole rocks, (iii) the detailed chemical signature contained in a LIBS spectrum and (iv) the ability to take LIBS into the field in backpack portable instrumentation. Three case studies illustrate potential applications of LIBS in the geosciences. First, analysis of the Carrizozo basalt flow in New Mexico, USA, illustrated that LIBS spectra could discriminate between samples of similar composition within uncertainties typical of whole‐rock analysis by X‐ray fluorescence spectrometry. Second, spectra from four sets of rubies from Madagascar and Tanzania illustrate the use of LIBS and multivariate analysis to determine provenance with success rates of > 95%. This technique can also be applied to correlation of units. Finally, a chemical map of a copper ore from Butte, MT, USA, illustrates the use of spatially defined LIBS spectra to understand chemical variations within textural context.

Beryl (Be3Al2Si6O18) is a chemically complex and highly compositionally variable gem-forming mineral found in a variety of geologic settings worldwide. A methodology and analytical protocol were developed for the analysis of beryl by laser-induced breakdown spectroscopy (LIBS) that minimizes the coefficient of variance for multiple analyses of the same specimen. The parameters considered were laser energy/pulse, time delay and crystallographic orientation. Optimal analytical conditions are a laser energy/pulse of 102 mJ and a time delay of 2 micros. Beryl compositions measured parallel and perpendicular to the c axis were identical within analytical error. LIBS analysis of 96 beryls from 16 countries (Afghanistan, Brazil, Canada, China, Colombia, India, Ireland, Italy, Madagascar, Mexico, Mozambique, Namibia, Norway, Russia, Tanzania and United States), Antarctica, and ten US states (AZ, CA, CO, CT, ID, ME, NC, NH, NM and UT) were undertaken to determine whether or not LIBS analysis can be used to determine the provenance of gem beryl.