We present the fifth release of the UMIST Database for Astrochemistry (UDfA). The new reaction network contains 6173 gas-phase reactions, involving 467 species, 47 of which are new to this release. We have updated rate coefficients across all reaction types. We have included 1171 new anion reactions and updated and reviewed all photorates. In addition to the usual reaction network, we also now include, for download, state-specific deuterated rate coefficients, deuterium exchange reactions and a list of surface binding energies for many neutral species. Where possible, we have referenced the original source of all new and existing data. We have tested the main reaction network using a dark cloud model and a carbon-rich circumstellar envelope model. We present and briefly discuss the results of these models.
Context. Protoplanetary disks are vital objects in star and planet formation, possessing all the material, gas and dust, which may form a planetary system orbiting the new star. Small, simple molecules have traditionally been detected in protoplanetary disks; however, in the ALMA era, we expect the molecular inventory of protoplanetary disks to significantly increase. Aims. We investigate the synthesis of complex organic molecules (COMs) in protoplanetary disks to put constraints on the achievable chemical complexity and to predict species and transitions which may be observable with ALMA. Methods. We have coupled a 2D steady-state physical model of a protoplanetary disk around a typical T Tauri star with a large gas-grain chemical network including COMs. We compare the resulting column densities with those derived from observations and perform ray-tracing calculations to predict line spectra. We compare the synthesised line intensities with current observations and determine those COMs which may be observable in nearby objects. We also compare the predicted grain-surface abundances with those derived from cometary comae observations. Results. We find COMs are efficiently formed in the disk midplane via grain-surface chemical reactions, reaching peak grain-surface fractional abundances ∼10 −6 -10 −4 that of the H nuclei number density. COMs formed on grain surfaces are returned to the gas phase via non-thermal desorption; however, gas-phase species reach lower fractional abundances than their grain-surface equivalents, ∼10 −12 -10 −7 . Including the irradiation of grain mantle material helps build further complexity in the ice through the replenishment of grain-surface radicals which take part in further grain-surface reactions. There is reasonable agreement with several line transitions of H 2 CO observed towards T Tauri star-disk systems. There is poor agreement with HC 3 N lines observed towards LkCa 15 and GO Tau and we discuss possible explanations for these discrepancies. The synthesised line intensities for CH 3 OH are consistent with upper limits determined towards all sources. Our models suggest CH 3 OH should be readily observable in nearby protoplanetary disks with ALMA; however, detection of more complex species may prove challenging, even with ALMA "Full Science" capabilities. Our grain-surface abundances are consistent with those derived from cometary comae observations providing additional evidence for the hypothesis that comets (and other planetesimals) formed via the coagulation of icy grains in the Sun's natal disk.
Context. Near-to mid-infrared observations of molecular emission from protoplanetary disks show that the inner regions are rich in small organic volatiles (e.g., C 2 H 2 and HCN). Trends in the data suggest that disks around cooler stars (T eff ≈ 3000 K) are potentially (i) more carbon-rich; and (ii) more molecule-rich than their hotter counterparts (T eff > ∼ 4000 K). Aims. We explore the chemical composition of the planet-forming region (<10 AU) of protoplanetary disks around stars over a range of spectral types (from M dwarf to Herbig Ae) and compare with the observed trends. Methods. Self-consistent models of the physical structure of a protoplanetary disk around stars of different spectral types are coupled with a comprehensive gas-grain chemical network to map the molecular abundances in the planet-forming zone. The effects of (i) N 2 self shielding; (ii) X-ray-induced chemistry; and (iii) initial abundances, are investigated. The chemical composition in the "observable" atmosphere is compared with that in the disk midplane where the bulk of the planet-building reservoir resides. Results. M dwarf disk atmospheres are relatively more molecule rich than those for T Tauri or Herbig Ae disks. The weak far-UV flux helps retain this complexity which is enhanced by X-ray-induced ion-molecule chemistry. N 2 self shielding has only a small effect in the disk molecular layer and does not explain the higher C 2 H 2 /HCN ratios observed towards cooler stars. The models underproduce the OH/H 2 O column density ratios constrained in Herbig Ae disks, despite reproducing (within an order of magnitude) the absolute value for OH: the inclusion of self shielding for H 2 O photodissociation only increases this discrepancy. One possible explanation is the adopted disk structure. Alternatively, the "hot" H 2 O (T > ∼ 300 K) chemistry may be more complex than assumed. The results for the atmosphere are independent of the assumed initial abundances; however, the composition of the disk midplane is sensitive to the initial main elemental reservoirs. The models show that the gas in the inner disk is generally more carbon rich than the midplane ices. This effect is most significant for disks around cooler stars. Furthermore, the atmospheric C/O ratio appears larger than it actually is when calculated using observable tracers only. This is because gas-phase O 2 is predicted to be a significant reservoir of atmospheric oxygen.Conclusions. The models suggest that the gas in the inner regions of disks around cooler stars is more carbon rich; however, calculations of the molecular emission are necessary to definitively confirm whether the chemical trends reproduce the observed trends.
Context. The atmospheres of extrasolar planets are thought to be built largely through accretion of pebbles and planetesimals. Such pebbles are also the building blocks of comets. The chemical composition of their volatiles are usually taken to be inherited from the ices in the collapsing cloud. However, chemistry in the protoplanetary disk midplane can modify the composition of ices and gases. Aims. To investigate if and how chemical evolution affects the abundances and distributions of key volatile species in the midplane of a protoplanetary disk in the 0.2-30 AU range. Methods. A disk model used in planet population synthesis models is adopted, providing temperature, density and ionisation rate at different radial distances in the disk midplane. A full chemical network including gas-phase, gas-grain interactions and grain-surface chemistry is used to evolve chemistry in time, for 1 Myr. Both molecular (inheritance from the parent cloud) and atomic (chemical reset) initial conditions are investigated. Results. Great diversity is observed in the relative abundance ratios of the main considered species: H 2 O, CO, CO 2 , CH 4 , O 2 , NH 3 and N 2 . The choice of ionisation level, the choice of initial abundances, as well as the extent of chemical reaction types included are all factors that affect the chemical evolution. The only exception is the inheritance scenario with a low ionisation level, which results in negligible changes compared with the initial abundances, regardless of whether grain-surface chemistry is included. The grain temperature plays an important role, especially in the critical 20-28 K region where atomic H no longer sticks long enough to the surface to react, but atomic O does. Above 28 K, efficient grain-surface production of CO 2 ice is seen, as well as O 2 gas and ice under certain conditions, at the expense of H 2 O and CO. H 2 O ice is produced on grain surfaces only below 28 K. For high ionisation levels at intermediate disk radii, CH 4 gas is destroyed and converted into CO and CO 2 (in contrast with previous models), and similarly NH 3 gas is converted into N 2 . At large radii around 30 AU, CH 4 ice is enhanced leading to a low gaseous CO abundance. As a result, the overall C/O ratios for gas and ice change significantly with radius and with model assumptions. For high ionisation levels, chemical processing becomes significant after a few times 10 5 yrs. Conclusions. Chemistry in the disk midplane needs to be considered in the determination of the volatile composition of planetesimals. In the inner <30 AU disk, interstellar ice abundances are preserved only if the ionisation level is low, or if these species are included in larger bodies within 10 5 yrs.
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