Predicting the patient's clinical outcome from the historical electronic medical records (EMR) is a fundamental research problem in medical informatics. Most deep learning-based solutions for EMR analysis concentrate on learning the clinical visit embedding and exploring the relations between visits. Although those works have shown superior performances in healthcare prediction, they fail to explore the personal characteristics during the clinical visits thoroughly. Moreover, existing works usually assume that the more recent record weights more in the prediction, but this assumption is not suitable for all conditions. In this paper, we propose ConCare to handle the irregular EMR data and extract feature interrelationship to perform individualized healthcare prediction. Our solution can embed the feature sequences separately by modeling the time-aware distribution. ConCare further improves the multi-head self-attention via the cross-head decorrelation, so that the inter-dependencies among dynamic features and static baseline information can be effectively captured to form the personal health context. Experimental results on two real-world EMR datasets demonstrate the effectiveness of ConCare. The medical findings extracted by ConCare are also empirically confirmed by human experts and medical literature.
Multimodal electronic health record (EHR) data are widely used in clinical applications. Conventional methods usually assume that each sample (patient) is associated with the unified observed modalities, and all modalities are available for each sample. However, missing modality caused by various clinical and social reasons is a common issue in real-world clinical scenarios. Existing methods mostly rely on solving a generative model that learns a mapping from the latent space to the original input space, which is an unstable ill-posed inverse problem. To relieve the underdetermined system, we propose a model solving a direct problem, dubbed learning with Missing Modalities in Multimodal healthcare data (M 3 Care). M 3 Care is an end-to-end model compensating the missing information of the patients with missing modalities to perform clinical analysis. Instead of generating raw missing data, M 3 Care imputes the task-related information of the missing modalities in the latent space by the auxiliary information from each patient's similar neighbors, measured by a task-guided modality-adaptive similarity metric, and thence conducts the clinical tasks. The taskguided modality-adaptive similarity metric utilizes the uncensored modalities of the patient and the other patients who also have the * Both authors contributed equally to this research.
Deep learning models have been applied to many healthcare tasks based on electronic medical records (EMR) data and shown substantial performance. Existing methods commonly embed the records of a single patient into a representation for medical tasks. Such methods learn inadequate representations and lead to inferior performance, especially when the patient’s data is sparse or low-quality. Aiming at the above problem, we propose GRASP, a generic framework for healthcare models. For a given patient, GRASP first finds patients in the dataset who have similar conditions and similar results (i.e., the similar patients), and then enhances the representation learning and prognosis of the given patient by leveraging knowledge extracted from these similar patients. GRASP defines similarities with different meanings between patients for different clinical tasks, and finds similar patients with useful information accordingly, and then learns cohort representation to extract valuable knowledge contained in the similar patients. The cohort information is fused with the current patient’s representation to conduct final clinical tasks. Experimental evaluations on two real-world datasets show that GRASP can be seamlessly integrated into state-of-the-art models with consistent performance improvements. Besides, under the guidance of medical experts, we verified the findings extracted by GRASP, and the findings are consistent with the existing medical knowledge, indicating that GRASP can generate useful insights for relevant predictions.
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