▪ Abstract  Flowing water has profound effects on a diverse array of ecological processes and patterns in streams and rivers. We propose a conceptual framework for investigating the multiple causal pathways by which flow influences benthic biota and focus particular attention on the local scales at which these organisms respond to flow. Flow (especially characteristics linked to the velocity field) can strongly affect habitat characteristics, dispersal, resource acquisition, competition, and predation; creative experiments will be needed to disentangle these complex interactions. Benthic organisms usually reside within the roughness layer, where the unique arrangement of sediment particles produces strongly sheared and highly three-dimensional flow patterns. Thus, accurate characterization of the local flow environments experienced by benthic organisms often requires the use of flow measurement technology with high spatial and temporal resolution. Because flow exhibits variation across a broad range of scales, it is also necessary to examine how organism-flow relationships at one scale are linked to those at others. Interdisciplinary approaches are needed in the study of physical-biological coupling; increased collaboration between ecologists and experts in fluid mechanics and hydraulic engineering is particularly desirable. A greater understanding of physical-biological coupling will not only yield deeper insights into the ecological organization of streams and rivers, it will also improve our ability to predict how flow alterations caused by various human activities affect these vital ecosystems.

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Foraging theory predicts the evolution of feeding behaviors that increase consumer fitness. Sponges were among the earliest metazoans on earth and developed a unique filter‐feeding mechanism that does not rely on a nervous system. Once thought indiscriminate, sponges are now known to selectively consume picoplankton, but it is unclear whether this confers any benefit. Additionally, sponges consume dissolved organic carbon (DOC) and detritus, but relative preferences for these resources are unknown. We quantified suspension feeding by the giant barrel sponge Xestospongia muta on Conch Reef, Florida, to examine relationships between diet choice, food resource availability, and foraging efficiency. Sponges consistently preferred cyanobacteria over other picoplankton, which were preferred over detritus and DOC; nevertheless, the sponge diet was mostly DOC (∼70%) and detritus (∼20%). Consistent with foraging theory, less‐preferred foods were discriminated against when relatively scarce, but were increasingly accepted as they became relatively more abundant. Food uptake was limited, likely by post‐capture constraints, yet selective foraging enabled sponges to increase nutritional gains.

Caribbean coral reefs have been transformed in the past few decades with the demise of reef-building corals, and sponges are now the dominant habitat-forming organisms on most reefs. Competing hypotheses propose that sponge communities are controlled primarily by predatory fishes (top-down) or by the availability of picoplankton to suspension-feeding sponges (bottom-up). We tested these hypotheses on Conch Reef, off Key Largo, Florida, by placing sponges inside and outside predator-excluding cages at sites with less and more planktonic food availability (15 m vs. 30 m depth). There was no evidence of a bottom-up effect on the growth of any of 5 sponge species, and 2 of 5 species grew more when caged at the shallow site with lower food abundance. There was, however, a strong effect of predation by fishes on sponge species that lacked chemical defenses. Sponges with chemical defenses grew slower than undefended species, demonstrating a resource trade-off between growth and the production of secondary metabolites. Surveys of the benthic community on Conch Reef similarly did not support a bottom-up effect, with higher sponge cover at the shallower depth. We conclude that the structure of sponge communities on Caribbean coral reefs is primarily top-down, and predict that removal of sponge predators by overfishing will shift communities toward faster-growing, undefended species that better compete for space with threatened reef-building corals.

Turbulence causes chemical stimuli to be highly variable in time and space; hence the study of animal orientation in odor plumes presents a formidable challenge. Through combined chemical and physical measurements, we characterized the transport of attractant released by clam prey in a turbulent aquatic environment. Concurrently, we quantified the locomotory responses of predatory crabs successfully searching for sources of clam attractant. Our results demonstrate that both rheotaxis and chemotaxis are necessary for successful orientation. Perception of chemical cues causes crabs to move in the upstream direction, but feedback from attractant distributions directly regulates movement across-stream in the plume. Orientation mechanisms used by crabs difler from those employed by flying insects, the only other system in which navigation relative to odor plumes has been coupled with fluid dynamics. Insects respond to odors by moving upstream, but they do not use chemical distributions to determine across-stream direction, whereas crabs do. Turbulent eddy diffusivities in crab habitats are 100 to 1000 times lower than those of terrestrial grasslands and forests occupied by insects. Insects must respond to plumes consisting of highly dispersed, tiny filaments or parcels of odor. Crabs rely more heavily on spatial aspects of chemical stimulus distributions because their fluid dynamic environment creates a more stable plume structure, thus permitting chemotaxis.