A two-layered confined-unconfined numerical model for flow and mass transport is developed for the San Jacinto Basin. The model structure is determined by the geological structure of the Basin and model parameters are calibrated using 20 years of historical records. The total number of historical head observations used for the flow model calibration is 1,117 and the total number of the estimated parameters is 91. The two-layered transport model is also calibrated using historical water quality records. Sensitivity analysis of the flow model shows that only 68 parameters (out of a total of 91) are relatively sensitive and reliable. However, the unreliable parameters (23 of them) are found to be insensitive and thus not significant to the prediction and management of conjunctive use of surface water and ground water. The developed flow model has been used to study the two proposed artificial recharge scenarios for the San Jacinto Basin. We have found that during a relatively dry condition, an artificial recharge rate of 80 acre-ft/day can be achieved during the recharge period October through January.However, for a relatively wet condition, only 80 percent of the proposed rate can be effectively stored in the Basin during these months.(KEY TERMS: artificial recharge; conjunctive use; mathematical models; model calibration; sensitivity analysis.) at the lowest possible long-term cost.