In Peru, many of the SMEs do not have a system focused on Human Resources (employees), many times because the companies do not have the necessary technology to implement it, they are not aware of it or the prices are quite high. That is why in the following work we designed a payroll control and monitoring system based on the Agile Scrum Methodology, based on the example of the textile company Chalicen S.A.C, which is within the range of small companies. The results are the development of prototypes according to the functionalities proposed by the Scrum team, which leads to better teamwork, customer satisfaction and constant communication between project members. The development of a design of a payroll system appropriate to the requirements of the company can achieve control of human resources, thus helping to implement it in SMEs in Peru.