Among the more than one hundred formally described human papillomavirus (HPV) types, 18 are referred to as high-risk HPV types due to their association with anogenital cancer. Despite pathogenic similarities, these types form three remotely related taxonomic groups. One of these groups is called HPV species 9 and is formed by HPV-16, the most common and best-studied type, together with HPV-31, -33, -35, -52, -58, and -67. Previous worldwide comparisons of HPV-16 samples showed about 2% nucleotide diversity between isolates, which were subsequently termed variants. The distribution of divergent variants has been found to correlate frequently with the geographic origin and the ethnicity of the infected patients and led to the concept of unique African, European, Asian, and Native American HPV-16 variants. In the current study, we address the question of whether geography and ethnicity also correlate with sequence variations found for HPV-31, -35, -52, and -58. This was done by sequencing the long control region in samples derived from Europe, Asia, and Africa, and from immigrant populations in North and South America. We observed maximal divergence between any two variants within each of these four HPV types ranging from 1.8 to 3.6% based on nucleotide exchanges and, occasionally, on insertions and deletions. Similar to the case with HPV-16, these mutations are not random but indicate a relationship between the variants in form of phylogenetic trees. An interesting example is presented by a 16-bp insert in select variants of HPV-35, which appears to have given rise to additional variants by nucleotide exchanges within the insert. All trees showed distinct phylogenetic topologies, ranging from dichotomic branching in the case of HPV-31 to star phylogenies of the other three types. No clear similarities between these types or between these types and HPV-16 exist. While variant branches in some types were specific for Europe, Africa, or East Asia, none of the four trees reflected human evolution and spread to the extent illustrated by HPV-16. One possible explanation is that the rare HPV types that we studied spread and thereby diversified more slowly than the more abundant HPV-16 and may have established much of today's variant diversity already before the worldwide spread of humans 100,000 years ago. Most variants had prototypic amino acid sequences within the E6 oncoprotein and a segment of the L1 capsid protein. Some had one, two, or three amino acid substitutions in these regions, which might indicate biological and pathogenic diversity between the variants of each HPV type.The phylogeny-based taxonomy of papillomaviruses (PVs) places these viruses into a separate family which is further divided into genera and species (11). On lower taxonomic levels, PVs are classified as types, subtypes, and variants. Basic and clinical research normally addresses PVs on these lower three levels of taxonomy. More than one hundred different human papillomavirus (HPV) types have been formally described (1, 9, 11). Eighteen HPV t...

Paracoccidioides brasiliensis is a pathogenic fungus that undergoes a temperaturedependent cell morphology change from mycelium (22 • C) to yeast (36 • C). It is assumed that this morphological transition correlates with the infection of the human host. Our goal was to identify genes expressed in the mycelium (M) and yeast (Y) forms by EST sequencing in order to generate a partial map of the fungus transcriptome. Individual EST sequences were clustered by the CAP3 program and annotated using Blastx similarity analysis and InterPro Scan. Three different databases, GenBank nr, COG (clusters of orthologous groups) and GO (gene ontology) were used for annotation. A total of 3938 (Y = 1654 and M = 2274) ESTs were sequenced and clustered into 597 contigs and 1563 singlets, making up a total of 2160 genes, which possibly represent one-quarter of the complete gene repertoire in P. brasiliensis. From this total, 1040 were successfully annotated and 894 could be classified in 18 functional COG categories as follows: cellular metabolism (44%); information storage and processing (25%); cellular processes -cell division, posttranslational modifications, among others (19%); and genes of unknown functions (12%). Computer analysis enabled us to identify some genes potentially involved in the dimorphic transition and drug resistance. Furthermore, computer subtraction analysis revealed several genes possibly expressed in stage-specific forms of P. brasiliensis. Further analysis of these genes may provide new insights into the pathology and differentiation of P. brasiliensis. All EST sequences have been deposited in GenBank under Accession Nos CA580326-CA584263.

More than 100 HPV types have been described, 13 of which are classified as high-risk due to their association with the development of cervical cancer. The intratype genomic diversity of HPV-16 and -18 has been studied extensively, while little data have been generated for other less common high-risk types. The present study explores the nucleotide variability and phylogeny of the high-risk HPV-31, -33, -35, -52, and -58, in samples from Central Brazil. For this purpose, the LCR and the E6 and L1 genes were sequenced. Several variants of these HPV types were detected, some of which have been detected in other parts of the world. Furthermore, new variants of all types examined were characterized in a total of 13 new variants. Based on the E6 and L1 sequences, variants were described comprising conservative and non-conservative amino acid changes. For phylogenetic tree construction, samples characterized in this study were compared to others described and submitted to GenBank previously. The phylogenetic analysis of HPV-31, -33, -35, and -58 isolates did not reveal ethnic or geographical clustering as observed previously for HPV-16 and -18. HPV-35 analysis showed a dichotomic branching characteristic of viral subtypes. Interestingly, four clusters relative to the analysis of HPV-52 isolates were identified, two of which could be classified as Asian and European branches. The genomic characterization of HPV variants is crucial for understanding the intrinsic geographical relatedness and biological differences of these viruses and contributes further to studies on their infectivity and pathogenicity.

As a contribution to the public health authorities in planning prophylactic and therapeutic vaccine strategies, we describe the prevalence of human papillomavirus (HPV)

-(Comparison of scale in the spatial distribution of native species of the cerrado, em Brasília, DF). The scale of spatial distribution of three native tree species, Caryocar brasiliense, Pterodon pubescens and Sclerolobium paniculatum, and two native palm species, Syagrus comosa and S. flexuosa, in the cerrado was determined using three quadrat variance methods. The data were collected in an area of cerrado, sensu stricto, on the Fazenda Água Limpa of the University of Brasília in 128 contiguous quadrats of 5 x 8 m each. In each quadrat, all individuals of each species were located and their height measured. The scale of spatial distribution of each species was evaluated with the following methods: blocked quadrat variance (BQV); two-term local quadrat variance (TTLQV) and paired quadrat variance (PQV), for both all individuals and all woody individuals over 130 cm in height. The total number of individuals was 138 for C. brasiliense, 34 for P. pubescens, 82 for S. paniculatum, eight for S. comosa and 36 for S. flexuosa. All species showed a group in at least one of the methods. The time spent in collection of data was comparable to that for other studies of spatial distribuition and three of the five species had similar results in all methods. The pattern for C. brasiliense was similar to that found in another study using the same methodology, with a distance of approximately 350 m between groups. RESUMO -(Comparação do padrão da distribuição espacial em escalas diferentes de espécies nativas do cerrado, em Brasília, DF).O padrão de agrupamento espacial de três espécies arbóreas, Caryocar brasiliense, Pterodon pubescens e Sclerolobium paniculatum, e duas espécies de palmeiras, Syagrus comosa e S. flexuosa, nativas do cerrado, foi investigado usando três métodos de variância entre parcelas. Os dados foram coletados em uma área de cerrado sensu strictu da Fazenda Água Limpa da Universidade de Brasília, em Brasília, DF, em 128 parcelas contíguas de 5 x 8 m cada. Em cada parcela, foram procurados todos os indivíduos das espécies, anotando o número encontrado e suas alturas. Os dados foram tabelados e analisados usando as técnicas de variância entre blocos de parcelas (BQV), variância móvel entre blocos de parcelas (TTLQV) e variância entre parcelas pareadas (PQV), tanto para todos os indivíduos encontrados quanto para somente os indivíduos lenhosos maiores do que 130 cm em altura. O número total de indivíduos encontrado foi 138 para C. brasiliense, 34 para P. pubescens, 82 para S. paniculatum, oito para S. comosa e 36 para S. flexuosa. Todas as espécies apresentaram um padrão agrupado de distribuição espacial em pelo menos uma das metodologias e três das cinco espécies tiveram resultados semelhantes em todos os métodos. O padrão para C. brasiliense foi semelhante ao encontrado para esta mesma espécie em outra região do cerrado, utilizando a mesma metodologia, com uma distância de aproximadamente 350 m entre grupos.