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To explore the excited state dynamics of pyrimidine derivatives, we performed a combined experimental and theoretical study. We present resonant two-photon ionization (R2PI) and IR-UV double resonance spectra of 2,4-diaminopyrimidine and 2,6-diaminopurine seeded in a supersonic jet by laser desorption. For 2,4-diaminopyrimidine (S(0)-->S(1) 34,459 cm(-1)), we observed only the diamino tautomer with an excited state lifetime bracketed between experimental limits of 10 ps and 1 ns. For 2,6-diaminopurine, we observed two tautomers, the 9H- (S(0)-->S(1) 34,881 cm(-1)) and 7H- (S(0)-->S(1) 32,215 cm(-1)) diamino forms, with excited state lifetimes of 6.3±0.4 ns and 8.7±0.8 ns, respectively. We investigated the nature of the excited state of 2,4-diaminopyrimidine by means of multi-reference ab initio methods. The calculations of stationary points in the ground and excited states, minima on the S(0)/S(1) crossing seam and connecting reaction paths show that several paths with negligible barriers exist, allowing ultrafast radiationless deactivation if excited at energies slightly higher than the band origin. The sub-nanosecond lifetime found experimentally is in good agreement with this finding.

Cytosine methylation is a key mechanism of epigenetic regulation. CpG-dense loci, called "CpG islands", play a particularly important role in modulating gene expression. Methylation has long been suspected to alter the physical properties of DNA, but the full spectrum of the evoked changes is unknown. Here we measured the methylation-induced nanomechanical changes in a DNA molecule with the sequence of a CpG island. For the molecule under tension, contour length, bending rigidity and intrinsic stiffness decreased in hypermethylated dsDNA, pointing at structural compaction which may facilitate DNA packaging in vivo. Intriguingly, increased forces were required to convert hypermethylated dsDNA into an extended S-form configuration. The reduction of force hysteresis during mechanical relaxation indicated that methylation generates a barrier against strand unpeeling and melting-bubble formation. The high structural stability is likely to have significant consequences on the recognition, replication, transcription, and reparation of hypermethylated genetic regions.

Threshold photoelectron photoion coincidence spectroscopy is used to study the dissociation of energy-selected X(CH(3))(3)(+) ions (X = As, Sb, Bi) by methyl loss, the only process observed up to 2 eV above the ionization energy. The ion time-of-flight distributions and the breakdown diagrams are analyzed in terms of the statistical RRKM theory to obtain accurate ionic dissociation energies. These experiments complement previous studies on analogous trimethyl compounds of the N group where X = N and P. However, trimethylamine was observed to lose only an H atom, whereas trimethylphosphine was shown to lose methyl radical, H atom, and, to a lesser extent, methane in parallel dissociation reactions. Both kinetic and thermodynamic arguments are needed to explain these trends. The methyl radical loss has two channels: either a H transfer to the central atom, followed by CH(3) loss, or a direct homolytic bond cleavage. However, the H transfer channel is blocked in trimethylamine by an H loss channel with an earlier onset, and, thus, the methyl loss is not observed. Bond energies are defined based on ab initio reaction energies and show that the main thermodynamic reason behind the trends in the energetics is the significantly weakening C=X double bond in the ion in the N --> As direction. The first adiabatic ionization energies of Sb(CH(3))(3) and Bi(CH(3))(3) have also been measured by ultraviolet photoelectron spectroscopy to be 8.02 +/- 0.05 and 8.08 +/- 0.05 eV, respectively.