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The article describes an approach to organizing the teacher-students interaction in programming courses using the Git version control system. In order to select the most suitable and affordable system for educational needs a comparative analysis of different Git repository management systems was carried out. Based on the experience of various educational institutions that use version control systems in their courses, the advantages and disadvantages of using these systems in teaching were identified. Taking into account the existing problems, a software solution was developed based on the GitLab system. As part of this solution, a method is proposed for organizing the work of a teacher and students in disciplines that use version control systems. This approach implies using both GitLab and additional system, which serves as a manager for Git repositories and is designed to facilitate the work of the teacher and administrator by automating the tasks they perform. The main purpose of the article is a detailed description of this approach: limiting permissions to both teachers and students, GitLab organization and functionality, a list of use cases for each user. The article also presents common workflows of the additional system, its main entities and their relationships and an overview of the features that the system provides.