KRAS
is mutated in ∼20% of human cancers and is one of the
most sought-after targets for pharmacological modulation, despite
having historically been considered “undruggable.” The
discovery of potent covalent inhibitors of the KRAS
G12C
mutant in recent years has sparked a new wave of interest in small
molecules targeting KRAS. While these inhibitors have shown promise
in the clinic, we wanted to explore PROTAC-mediated degradation as
a complementary strategy to modulate mutant KRAS. Herein, we report
the development of LC-2, the first PROTAC capable of degrading endogenous
KRAS
G12C
. LC-2 covalently binds KRAS
G12C
with
a MRTX849 warhead and recruits the E3 ligase VHL, inducing rapid and
sustained KRAS
G12C
degradation leading to suppression of MAPK signaling in both homozygous
and heterozygous KRAS
G12C
cell lines. LC-2 demonstrates
that PROTAC-mediated degradation is a viable option for attenuating
oncogenic KRAS levels and downstream signaling in cancer cells.
Targeted protein degradation (TPD) has emerged as an exciting new era in chemical biology and drug discovery. PROteolysis TArgeting Chimera (PROTAC) technology targets cellular proteins for degradation by co-opting the ubiquitin-proteasome system. Over the last 5 years, numerous studies have expanded our understanding of the unique mode of action and advantages of PROTACs, which has in turn spurred interest in both academia and industry to explore PROTACs as a novel therapeutic strategy. In this review, we first highlight the key advantages of PROTACs and then discuss the spatiotemporal regulation of protein degradation. Next, we explore current chemically tractable E3 ligases focusing on expanding the existing repertoire with novel E3 ligases to uncover the full potential of TPD. Collectively, these studies are guiding the development of the PROTAC technology as it emerges as a new modality in precision medicine. ll
Highlights d TRAFTACs are heterobifunctional chimeric oligos d Transcription factors are recruited to the double-stranded DNA of the chimeric TRAFTACs d TRAFTACs are generalizable d Brachyury-TRAFTAC induces no tail phenotype in zebrafish embryos
Histone
deacetylase (HDAC) proteins are promising targets for cancer
treatment, as shown by the approval of two HDAC inhibitors for the
treatment of cutaneous T-cell lymphoma. HDAC1 in particular has been
linked to cell growth and cell cycle regulation and is therefore an
attractive target for anticancer drugs. The HDAC1 active site contains
a hydrophobic 11 Å active-site channel, with a 14 Å internal
cavity at the bottom of the active site. Several computational and
biochemical studies have proposed an acetate-escape hypothesis where
the acetate byproduct of the deacetylation reaction escapes via the
14 Å internal cavity. Selective HDAC inhibitors that bind to
the 14 Å cavity have also been created. To understand the influence
of amino acids lining the HDAC1 14 Å cavity in acetate escape
and inhibitor binding, we used mutagenesis coupled with acetate competition
assays. The results indicate that amino acids lining the 14 Å
cavity are critical for catalytic activity and acetate competition,
confirming the role of the cavity in acetate escape. In addition,
these mutagenesis studies will aid in HDAC1-inhibitor design that
exploits the 14 Å cavity.
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