Here we report the genome sequence of the honeybee Apis mellifera, a key model for social behaviour and essential to global ecology through pollination. Compared with other sequenced insect genomes, the A. mellifera genome has high A+T and CpG contents, lacks major transposon families, evolves more slowly, and is more similar to vertebrates for circadian rhythm, RNA interference and DNA methylation genes, among others. Furthermore, A. mellifera has fewer genes for innate immunity, detoxification enzymes, cuticle-forming proteins and gustatory receptors, more genes for odorant receptors, and novel genes for nectar and pollen utilization, consistent with its ecology and social organization. Compared to Drosophila, genes in early developmental pathways differ in Apis, whereas similarities exist for functions that differ markedly, such as sex determination, brain function and behaviour. Population genetics suggests a novel African origin for the species A. mellifera and insights into whether Africanized bees spread throughout the New World via hybridization or displacement.

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Oogenesis in insects is typically a nutrient-limited process, triggered only if sufficient nourishment is available. This nourishment can be acquired during the larval or adult stage, depending on the insect. Timing of food intake will have major effects on mechanisms of hormonal control. When nourishment for eggs is taken primarily by adults, insufficient nutrition inhibits egg development through mechanisms such as inhibition of corpora allata, as seen in Orthoptera and Blattaria. In adult Diptera, lack of protein inhibits release of brain factors that produce reproductive competency or ovarian stimulation. Lepidoptera have been characterized as lacking substantial regulation of oogenesis because egg development is underway at emergence. Many species for which ecological data are available do not mobilize reserves carried over from the larval stage until they feed as adults. The endocrine mechanisms underlying these systems are poorly understood. In many insects, mating and activity can affect nutritional state and therefore oogenesis. Mating can stimulate oogenesis through mobilization of reserves or through nutritional contributions by males to females. Activity, especially flight, and oogenesis can compete for energy. The flight apparatus, especially the muscle, can also compete with oogenesis for protein. Social insects exhibit extreme specializations in oogenesis; females range in fertility from completely sterile to hyperfecund. Food flow within colonies is a major factor regulating fecundity. Finally, maternal nourishment is not needed for oogenesis in parasitoids and pseudoplacental viviparous insects, which produce eggs with little or no yolk. Virtually nothing is known about the endocrine regulation of oogenesis on these insects.

Ants dominate many terrestrial ecosystems, yet we know little about their nutritional physiology and ecology. While traditionally viewed as predators and scavengers, recent isotopic studies revealed that many dominant ant species are functional herbivores. As with other insects with nitrogen-poor diets, it is hypothesized that these ants rely on symbiotic bacteria for nutritional supplementation. In this study, we used cloning and 16S sequencing to further characterize the bacterial flora of several herbivorous ants, while also examining the beta diversity of bacterial communities within and between ant species from different trophic levels. Through estimating phylogenetic overlap between these communities, we tested the hypothesis that ecologically or phylogenetically similar groups of ants harbor similar microbial flora. Our findings reveal: (i) clear differences in bacterial communities harbored by predatory and herbivorous ants; (ii) notable similarities among communities from distantly related herbivorous ants and (iii) similar communities shared by different predatory army ant species. Focusing on one herbivorous ant tribe, the Cephalotini, we detected five major bacterial taxa that likely represent the core microbiota. Metabolic functions of bacterial relatives suggest that these microbes may play roles in fixing, recycling, or upgrading nitrogen. Overall, our findings reveal that similar microbial communities are harbored by ants from similar trophic niches and, to a greater extent, by related ants from the same colonies, species, genera, and tribes. These trends hint at coevolved histories between ants and microbes, suggesting new possibilities for roles of bacteria in the evolution of both herbivores and carnivores from the ant family Formicidae.

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