The rubber tree (Hevea spp.), cultivated in equatorial and tropical countries, is the primary plant used in natural rubber production. Due to genetic and physiological constraints, inbred lines of this species are not available. Therefore, alternative approaches are required for the characterization of this species, such as the genetic mapping of full-sib crosses derived from outbred parents. In the present study, an integrated genetic map was obtained for a full-sib cross family with simple sequence repeats (SSRs) and expressed sequence tag (EST-SSR) markers, which can display different segregation patterns. To study the genetic architecture of the traits related to growth in two different conditions (winter and summer), quantitative trait loci (QTL) mapping was also performed using the integrated map. Traits evaluated were height and girth growth, and the statistical model was based in an extension of composite interval mapping. The obtained molecular genetic map has 284 markers distributed among 23 linkage groups with a total length of 2688.8 cM. A total of 18 QTLs for growth traits during the summer and winter seasons were detected. A comparison between the different seasons was also conducted. For height, QTLs detected during the summer season were different from the ones detected during winter season. This type of difference was also observed for girth. Integrated maps are important for genetics studies in outbred species because they represent more accurately the polymorphisms observed in the genitors. QTL mapping revealed several interesting findings, such as a dominance effect and unique segregation patterns that each QTL could exhibit, which were independent of the flanking markers. The QTLs identified in this study, especially those related to phenotypic variation associated with winter could help studies of marker-assisted selection that are particularly important when the objective of a breeding program is to obtain phenotypes that are adapted to sub-optimal regions.

Endophytic fungi live inside plants as symbionts for at least one period of their life cycle. They play an important role in plant defence and could be promising sources of valuable natural bioactive products. The present study aimed to select endophytic fungi antagonistic to Microcyclus ulei, the agent of South American Leaf Blight (SALB) responsible for the weak development of rubber plantations in Latin America. Endophytic fungi were isolated from leaves of three cultivars (FX3864, CDC312, MDF180) of Hevea brasiliensis (the rubber tree) with distinct resistance levels to the attack by Microcyclus ulei. Leaf samples were collected from a 5,000 ha area of the Michelin plantations (Igrapiúna, Bahia, Brazil). A total of 435 colonies of endophytic fungi were isolated, purified, and preserved in sterilized distilled water. Lyophilized culture filtrates obtained from 88 fungal isolates, grown in liquid malt extract medium, were tested in vitro at concentrations of 50% and 12.5% for their inhibitory potential against the germination of M. ulei PMB26 conidia. Thirteen filtered cultures of endophytic fungi that presented inhibitory activity above 80% (at the concentration 12.5%) were characterized taxonomically by sequencing the ITS regions of rDNA, revealing the following taxa: Fusarium sp., Gibberella sp., Glomerella cingulata, Microsphaeropsis sp., Myrothecium sp., Pestalotiopsis sp. and Phomopsis sp. Three taxa were detected only in the resistant cultivars: Microsphaeropsis sp., and Pestalotiopsis sp. in MDF180, and Myrothecium sp. in CDC312. The present work constitutes the first study showing inhibitory activity of rubber tree endophytic fungi on Microcyclus ulei. These results provide an encouraging basis for the identification of new bioactive molecules for an effective control of South American leaf blight.