Most sources of stress in aquaculture, fish salvage, stocking programs, and commercial and sport fisheries may be unavoidable. Collecting, handling, sorting, holding, and transporting are routine practices that can have significant effects on fish physiology and survival. Nevertheless, an understanding of the stressors affecting fish holding can lead to practices that reduce stress and its detrimental effects. The stress-related effects of short-term holding are influenced by water quality, confinement density, holding container design, and agonistic and predation-associated behaviors. Physiological demands (e.g., resulting from confinement-related stresses) exceeding a threshold level where the fish can no longer compensate may lead to debilitating effects. These effects can be manifested as suppressed immune systems; decreased growth, swimming performance, or reproductive capacity; even death. Furthermore, holding tolerance may depend upon the species, life stage, previous exposure to stress, and behavior of the held fish. Water quality is one of the most important contributors to fish health and stress level. Fish may be able to tolerate adverse water quality conditions; however, when combined with other stressors, fish may be quickly overcome by the resulting physiological challenges. Temperature, dissolved oxygen, ammonia, nitrite, nitrate, salinity, pH, carbon dioxide, alkalinity, and hardness are the most common water quality parameters affecting physiological stress. Secondly, high fish densities in holding containers are the most common problem throughout aquaculture facilities, live-fish transfers, and fish salvage operations. Furthermore, the holding container design may also compromise the survival and immune function by affecting water quality, density and confinement, and aggressive interactions. Lastly, fishes held for relatively short durations are also influenced by negative interactions, associated with intraspecific and interspecific competition, cannibalism, predation, and determining nascent hierarchies. These interactions can be lethal (i.e., predation) or may act as a vector for pathogens to enter (i.e., bites and wounds). Predation may be a significant source of mortality for fisheries practices that do not sort by size or species while holding. Stress associated with short-term holding of fishes can have negative effects on overall health and well-being. These four aspects are major factors contributing to the physiology, Ó Springer Science+Business Media B.V. 2006behavior, and survival of fishes held for a relatively short time period.

Studying rare and sensitive species is a challenge in conservation biology. The problem is exemplified by the case of the imperiled delta smelt Hypomesus transpacificus, a small delicate fish species endemic to the San Francisco Estuary, California. Persistent record-low levels of abundance and relatively high sensitivity to handling stress pose considerable challenges to studying delta smelt in the wild. To attempt to overcome these and other challenges we have developed the SmeltCam, an underwater video camera codend for trawled nets. The SmeltCam functions as an open-ended codend that automatically collects information on the number and species of fishes that pass freely through a trawled net without handling. We applied the SmeltCam to study the fine-scale distribution of juvenile delta smelt in the water column in the upper San Francisco Estuary. We learned that during flood tides delta smelt were relatively abundant throughout the water column and that during ebb tides delta smelt were significantly less abundant and occurred only in the lower half and sides of the water column. The results suggest that delta smelt manipulate their position in the water column to facilitate retention in favorable habitats. With the application of the SmeltCam we increased the survival of individual delta smelt by 72% compared to using a traditional codend, where all of the fish would have likely died due to handling stress. The SmeltCam improves upon similar previously developed silhouette photography or video recording devices and demonstrates how new technology can be developed to address important questions in conservation biology as well as lessen the negative effects associated with traditional sampling methods on imperiled species.

SynopsisExtant fishes endemic to the upper Colorado River of the American southwest include only cyprinids and catostomids. A curious attribute in species of both groups is the presence of a large nuchal hump. Largest cyprinid humps occur in humpback chub, Gila cypha, and largest catostomid humps occur in razorback sucker, Xyrauchen texanus. Several authors have suggested the humps confer a hydrodynamic advantage to life in fast flow, but this premise has not been confirmed with experimental work. To test the role of humps in Colorado River fishes, we subjected whole-body casts of preserved specimens with humps and with humps removed to controlled flows in an experimental tank. These tests confirmed that humps increased drag coefficients for X. texanus and G. cypha with no additional lift component. High energetic costs of locomotion and position-holding with a large hump, and the additional metabolic expense of forming large humps, suggest that the humps are not relict structures. Instead, we argue that these large humps represent convergent evolution prompted by predation from a cyprinid piscivore. Colorado pikeminnow, Ptychocheilus lucius, top piscivore in the Colorado River system, is the only native fish capable of consuming large X. texanus and G. cypha, and it also is sympatric with them. However, lack of jaw teeth and a relatively small jaw gape limit the maximum prey size that P. lucius can consume. Based on gape size, about 55% of X. texanus and 71% of G. cypha could be consumed by even the largest P. lucius. However, vulnerability would increase to 73 and 83% respectively if these species did not have humps. Coevolution tends to favor predator defense mechanisms in prey most vulnerable to such a voracious predator. Development of a large nuchal hump provides a deep body that is difficult or impossible for P. lucius to ingest.

Knowledge of the habitats occupied by species is fundamental for the development of effective conservation and management actions. The collapse of pelagic fish species in the Sacramento-San Joaquin Delta, California, has triggered a need to better understand factors that drive their distribution and abundance. A study was conducted in summer-fall 2014 in an attempt to identify physical and biological habitat conditions that drive the abundance and distribution of pelagic species in the northern region of the system. The study was conducted in the three largest channels in the northern Sacramento-San Joaquin Delta by dimension, volume, and flow capacity. The pelagic community was dominated by three nonnative species, Siberian prawn Exopalaemon modestus, which comprised 56% of the total number of organisms, and two fish species, Threadfin Shad Dorosoma petenense and Mississippi Silversides Menidia audens, which together comprised 43% of the total number of organisms. Total fish and total shrimp abundance were sensitive to the most extreme values of turbidity and temperature encountered and positively associated with total zooplankton biomass. The results suggested that habitat conditions in terminal channels, historically a common feature on the landscape, support higher abundances of pelagic species and zooplankton than open-ended channels. These results provide resource managers with useful information on the habitat associations of pelagic species and on how the future distribution and abundance of pelagic species will likely change in response to climate or other ecological factors.