Allium przewalskianum
(Amaryllidaceae) is an important vegetable and/or condiment for Tibetans, Indians, and Nepalese in the highlands of the Himalayas. Here, we reported the complete chloroplast genome of
A. przewalskianum
using the next-generation sequencing method. The size of the chloroplast genome is 153,509 bp in length, including a large single copy region (LSC) of 82,302 bp, a small single copy region (SSC) of 17,717 bp, and a pair of inverted repeat (IR) regions with 26,745 bp. The
A. przewalskianum
chloroplast genome encodes 114 genes, including 68 protein-coding genes, 38 tRNA genes, and eight rRNA genes. Phylogenetic tree analysis suggested that
A. przewalskianum
was closely related to
A.ampeloprasum
and
A.sativum.
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