Pearl millet (Pennisetum glaucum (L.) R. Br.) is an important staple cereal cultivated in the arid and semi-arid tropics of Asia and Africa, regions severely affected by malnutrition. Knowledge about the extent of genetic variability and patterns of agro-morphological variation in local germplasm from a target region is an important prerequisite for efficient crop improvement. To assess the potential of Sudanese pearl millet landraces as sources of desirable traits for pearl millet improvement including biofortification, a total of 225 accessions were evaluated in Sudan at three locations for agro-morphological traits and at one location for grain mineral nutrient contents (Fe, Zn, Ca, P, K, Mg, Mn, S, Na, Cu and b-carotene). Genetic variation was highly significant, but relatively limited for some agro-morphological traits (62-78 d to flowering, 119-188 cm plant height and 16-34 cm panicle length), pointing to the potential usefulness of a targeted diversification for these traits. Self-pollinated grain micronutrient contents showed a wide variation: 19.7 -86.4 mg/kg for Fe and 13.5 -82.4 mg/kg for Zn. Significant and positive correlations among most of the nutritional traits were observed; therefore, enhancement of the concentrations of some nutrients will lead to the improvement of other related nutrients. No significant associations were observed between the nutritional and agro-morphological traits, indicating good prospects for simultaneous improvement of both trait categories. No clear patterns of geographic differentiation for specific traits were detected for the Sudanese pearl millet. Nutrient-rich accessions were identified and those with acceptable agro-morphological traits are encouraging materials for future pearl millet biofortification programmes in Sudan.

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Pearl millet [Cenchrus americanus (L.) Morrone syn. Pennisetum glaucum (L.) R. Br.] is one of the most extensively cultivated cereals in the world, after wheat (Triticum aestivum L.), maize (Zea mays L.), rice (Oryza sativa L.), barley (Hordeum vulgare L.), and sorghum [Sorghum bicolor (L.) Moench]. It is the main component of traditional farming systems and a staple food in the arid and semiarid regions of Africa and southern Asia. However, its genetic improvement is lagging behind other major cereals and the yield is still low. Genotyping-by-sequencing (GBS)-based single-nucleotide polymorphism (SNP) markers were screened on a total of 398 accessions from different geographic regions to assess genetic diversity, population structure, and linkage disequilibrium (LD). By mapping the GBS reads to the reference genome sequence, 82,112 genome-wide SNPs were discovered. The telomeric regions of the chromosomes have the higher SNP density than in pericentromeric regions. Model-based clustering analysis of the population revealed a hierarchical genetic structure of six subgroups that mostly overlap with the geographic origins or sources of the genotypes but with differing levels of admixtures. A neighbor-joining phylogeny analysis revealed that germplasm from western Africa rooted the dendrogram with much diversity within each subgroup. Greater LD decay was observed in the west-African subpopulation than in the other subpopulations, indicating a long history of recombination among landraces. Also, genome scan of genetic differentiatation detected different selection histories among subpopulations. These results have potential application in the development of genomic-assisted breeding in pearl millet and heterotic grouping of the lines for improved hybrid performance.