We discuss synchronization in networks of neuronal oscillators which are interconnected via diffusive coupling, i.e. linearly coupled via gap junctions. In particular, we present sufficient conditions for synchronization in these networks using the theory of semi-passive and passive systems. We show that the conductance-based neuronal models of Hodgkin-Huxley, Morris-Lecar, and the popular reduced models of FitzHugh-Nagumo and Hindmarsh-Rose all satisfy a semi-passivity property, i.e. that is the state trajectories of such a model remain oscillatory but bounded provided that the supplied (electrical) energy is bounded. As a result, for a wide range of coupling configurations, networks of these oscillators are guaranteed to possess ultimately bounded solutions. Moreover, we demonstrate that when the coupling is strong enough the oscillators become synchronized. Our theoretical conclusions are confirmed by computer simulations with coupled Hindmarsh-Rose and Morris-Lecar oscillators. Finally we discuss possible "instabilities" in networks of oscillators induced by the diffusive coupling.

We consider the problem of asymptotic reconstruction of the state and parameter values in systems of ordinary differential equations. A solution to this problem is proposed for a class of systems of which the unknowns are allowed to be nonlinearly parameterized functions of state and time. Reconstruction of state and parameter values is based on the concepts of weakly attracting sets and non-uniform convergence and is subjected to persistency of excitation conditions. In the absence of nonlinear parametrization the resulting observers reduce to standard estimation schemes. In this respect, the proposed method constitutes a generalization of the conventional canonical adaptive observer design.

Inspired by signaling networks in living cells, DNA-based programming aims for the engineering of biochemical networks capable of advanced regulatory and computational functions under controlled cell-free conditions. While regulatory circuits in cells control downstream processes through hierarchical layers of signal processing, coupling of enzymatically driven DNA-based networks to downstream processes has rarely been reported. Here, we expand the scope of molecular programming by engineering hierarchical control of enzymatic actuators using feedback-controlled DNA-circuits capable of advanced regulatory dynamics. We developed a translator module that converts signaling molecules from the upstream network to unique DNA strands driving downstream actuators with minimal retroactivity and support these findings with a detailed computational analysis. We show our modular approach by coupling of a previously engineered switchable memories circuit to downstream actuators based on β-lactamase and luciferase. To the best of our knowledge, our work demonstrates one of the most advanced DNA-based circuits regarding complexity and versatility.

We consider networks with a general topology which consist of nonlinear systems that interact via diffusive coupling with constant time-delays. Using the notion of (semi-)passivity we prove under some mild assumptions that passive systems will synchronize and that the solutions of interconnected semi-passive systems will be bounded. Furthermore we prove that identical strictly semi-passive systems, whose internal dynamics are stable, always will synchronize given that the coupling between the systems is sufficiently strong and a possible constant time delay is sufficiently small. We demonstrate our results using numerical simulations of a network consisting of linear systems and a network consisting Hindmarsh-Rose neurons.

Complex networks emerging in natural and human-made systems tend to assume small-world structure. Is there a common mechanism underlying their self-organisation? Our computational simulations show that network diffusion (traffic flow or information transfer) steers network evolution towards emergence of complex network structures. The emergence is effectuated through adaptive rewiring: progressive adaptation of structure to use, creating short-cuts where network diffusion is intensive while annihilating underused connections. With adaptive rewiring as the engine of universal small-worldness, overall diffusion rate tunes the systems’ adaptation, biasing local or global connectivity patterns. Whereas the former leads to modularity, the latter provides a preferential attachment regime. As the latter sets in, the resulting small-world structures undergo a critical shift from modular (decentralised) to centralised ones. At the transition point, network structure is hierarchical, balancing modularity and centrality - a characteristic feature found in, for instance, the human brain.