Arg, Lys and Asp amino acids are known to play a critical role in the adhesion of the RKLPDA engineered peptide on the (101) surface of the titania anatase phase. To understand their contribution to peptide adhesion, we have considered the relevant charge states due to protonation (Arg and Lys) or deprotonation (Asp) occurring in neutral water solution, and studied their adsorption on the (101) anatase TiO2 surface by ab initio total energy calculations based on density functional theory. The adsorption configurations on the hydrated surface are compared to those on the dry surface considering also the presence of the hydration shell around amino acid side-chains. This study explains how water molecules mediate the adsorption of charged amino acids showing that protonated amino acids are chemically adsorbed much more strongly than de-protonated Asp. Moreover it is shown that the polar screening of the hydration shell reduces the adsorption energy of the protonated amino acids to a small extent, thus evidencing that both Arg and Lys strongly adhere on the (101) anatase TiO2 surface in neutral water solution and that they play a major role in the adhesion of the RKLPDA peptide.

Solid-state nanopores and nanogaps are emerging as promising tools for single molecule analysis. 2D materials, such as graphene, can potentially reach the spatial resolution needed for nucleic acid and protein sequencing. In the context of the density functional theory, atomistic modeling and non-equilibrium Green's function calculation, we show that glycine based polypeptide chains translocating across a nano-gap between two semi-infinite graphene nano-ribbons leave a specific transverse current signature for each peptide bond. The projected density of states and bond current analyses reveal a complex scenario with a role played by the adjacent α-carbons and side chains and by the orbitals of the partially resonant double bond involving C, N and O atoms of the peptide bond. In this context, specific fingerprints of the atoms involved in the peptide bonds are found. The same scenario is evidenced also for peptides involving alanine residues. The signal measured can be considered as a specific fingerprint of peptide bonds between small and neutral amino acids with no polar/charge effects. On this basis, a newly conceived nano-device made of a graphene based array of nano-gap is proposed as a possible route to approach peptide sequencing with atomic resolution.

N‐Heterocyclic carbenes (NHCs) are widely used as organocatalysts. Their reactivity (and instability) is related to their basicity and nucleophilicity, which, in turn, are linked to their scaffold. NHCs can be generated by chemical deprotonation or electrochemical reduction of the parent azolium cations, NHCH+s. Cyclic voltammetry enabled the reduction potential of the NHCH+s to be determined; the reduction potential is related to the acidity of the NHCH+s and the oxidation potential of the NHCs, which is related to the nucleophilicity of the NHCs. It was thus possible to order different NHCH+s and NHCs by their acidity and nucleophilicity, respectively. A study on the stability of NHCs was also performed in the absence and in the presence of acetic acid to assess the possibility of the coexistence of NHC and an acid in the same solution, opening the possibility of co‐catalysis. Finally, ab initio calculations confirmed the presence, in DMF, of hydrogen‐bonded NHCH+–NHC adducts, which could influence catalyst activity.

(101) anatase TiO2 surface in water ambient is an important\ud system for the interaction of biocompatible nanodevices with biological\ud environment. Following the experimental evidence showing that water\ud molecules are mobile at temperature as low as 190 K and tend to form clusters\ud along the [111]/[111] surface directions, a complete theoretical characterization\ud of the dynamical properties of the first water layer on the (101) anatase TiO2\ud surface is presented. A variety of computational techniques have been employed\ud in the context of the transition-state theory in the harmonic regime, ranging\ud from first-principles total energy ground-state calculations, to density functional\ud perturbation theory, minimum energy path search, and kinetic Monte Carlo\ud simulations, to explain the experimental results on water kinetics on the (101)\ud anatase TiO2 surface. We have calculated the migration energy barrier of water\ud molecules, the vibrational prefactor through the phonon density of states, and\ud the hopping rate along two principal directions. Lastly, in a kinetic Monte Carlo\ud context, we have simulated and clarified the dynamical processes that are on the basis of the observed experimental behavio