Cáhuil Lagoon in central Chile harbors distinct microbial communities in various solar salterns that are arranged as interconnected ponds with increasing salt concentrations. Here, we report the metagenome of the 3.0- to 0.2-µm fraction of the microbial community present in a crystallizer pond with 34% salinity.

Laguna de Rocha belongs to a series of shallow coastal lagoons located along South America. It is periodically connected to the sea through a sand bar, exhibiting a hydrological cycle where physicochemical and biological gradients are rapidly established and destroyed. Its most frequent state is the separation of a Northern zone with low salinity, high turbidity and nutrient load, and extensive macrophyte growth, and a Southern zone with higher salinity and light penetration, and low nutrient content and macrophyte biomass. This zonation is reflected in microbial assemblages with contrasting abundance, activity, and community composition. The physicochemical conditions exerted a strong influence on community composition, and transplanted assemblages rapidly transformed to resembling the community of the recipient environment. Moreover, the major bacterial groups responded differently to their passage between the zones, being either stimulated or inhibited by the environmental changes, and exhibiting contrasting sensitivities to gradients. Addition of allochthonous carbon sources induced pronounced shifts in the bacterial communities, which in turn affected the microbial trophic web by stimulating heterotrophic flagellates and virus production. By contrast, addition of organic and inorganic nutrient sources (P or N) did not have significant effects. Altogether, our results suggest that (i) the planktonic microbial assemblage of this lagoon is predominantly carbon-limited, (ii) different bacterial groups cope differently with this constraint, and (iii) the hydrological cycle of the lagoon plays a key role for the alleviation or aggravation of bacterial carbon limitation. Based on these findings we propose a model of how hydrology affects the composition of bacterioplankton and of carbon processing in Laguna de Rocha. This might serve as a starting hypothesis for further studies about the microbial ecology of this lagoon, and of comparable transitional systems.

Fildes Peninsula, on King George Island, has been greatly influenced by recent rapid climate warming. Lakes are pervasive features of Fildes Peninsula landscapes, some of which are used as water sources for Antarctic stations. We studied seven Fildes Peninsula lakes to explore differences among lakes and between seasons in phytoplankton and bacterioplankton communities. We measured environmental variables, analysed pigments using high-performance liquid chromatography and examined bacterial DNA through high-throughput sequencing of the 16S rRNA gene. The main driver structuring microbial communities was the season (i.e. spring vs autumn). Chlorophyceae were the dominant phytoplankton group in all lakes and both seasons. Indicator bacteria for each season were identified, including Flavobacterium, Polaromonas and Oxalobacteraceae as indicators of spring conditions under thick ice, whereas Frankiales and Verrucomicrobia were indicator species of autumn following the ice-free summer. The indicator species for spring are generally observed in oligotrophic conditions, whereas many of the autumn indicators are commonly found in soils. There were lesser between-lake differences in microbial communities in autumn, at the end of the open-water period, than in spring at the end of the ice-covered period. This study will act as the basis for future assessments of changes in aquatic microbial communities.