Atomic frequency standards using trapped ions or cold atoms work intrinsically in a pulsed mode. Theoretically and experimentally, this mode of operation has been shown to lead to a degradation of the frequency stability due to the frequency noise of the interrogation oscillator. In this paper a physical analysis of this effect has been made by evaluating the response of a two-level atom to the interrogation oscillator phase noise in Ramsey and multi-Rabi interrogation schemes using a standard quantum mechanical approach. This response is then used to calculate the degradation of the frequency stability of a pulsed atomic frequency standard such as an atomic fountain or an ion trap standard. Comparison is made to an experimental evaluation of this effect in the LPTF Cs fountain frequency standard, showing excellent agreement.

We have designed and built a nwel linear ion trap which permits storage of a large number of ions with reduced susceptibility to the second order Doppler effect caused by the BF conjbing fields. This new trap should store about 20 times the number of ions as a conventional RF trap with no corresponding increase in second order Doppler shift from the confining fleld. Other comparisons to etandard RF ion traps will be made.

We discuss the implications of using highpower microwave tests in a fountain frequency standard to measure the frequency bias resulting from distributed cavity-phase shifts. We develop a theory which shows that the frequency bias from distributed cavity phase depends on the amplitude of the microwave field within the cavity. The dependence leads to the conclusion that the frequency bias associated with the distributed cavity phase is typically both misestimated and counted twice within the error budget of fountain frequency standards.

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