Blue sucker Cycleptus elongatus (L.) in the upper Yazoo River basin, Mississippi, USA was studied using overnight hoop net sets (n = 4093) during 1988 and 1990–1998 to determine the influence of channel dredging. There were 264 blue suckers captured, ranging from 3 to 11 years of age. Length ranged from 265 to 700 mm and weight from 120 to 4700 g. Concurrent studies with smaller mesh hoop nets failed to capture any juvenile blue suckers. Catch‐per‐unit‐effort (CPUE: fish net−1) declined throughout the study in the Yalobusha River, a river subjected to channel dredging during 1988 and 1994. With the exception of limited hydraulic dredging in the Tallahatchie River, there was no dredging in the other Yazoo River tributaries, nor were there declines in blue sucker catch rates in these rivers. Throughout the upper Yazoo River basin, blue sucker stocks were dominated by adult fish, and there was little evidence of reproduction or recruitment. Conservation of the blue sucker in the upper Yazoo River basin should include actions that ensure the functional integrity of this floodplain river ecosystem and elimination of channel dredging throughout the basin.