HCV is a major etiological agent of liver disease with a high rate of chronic evolution. The virus possesses 6 genotypes with many subtypes. The rate of spontaneous clearance among HCV infected individuals denotes a genetic determinant factor. The current study was designed in order to estimate the rate of HCV infection and ratio of virus clearance among a group of infected patients in Saudi Arabia from 2008 to 2011. It was additionally designed to determine the genotypes of the HCV in persistently infected patients. HCV seroprevalence was conducted on a total of 15,323 individuals. Seropositive individuals were tested by Cobas AmpliPrep/Cobas TaqMan HCV assay to determine the ratio of persistently infected patients to those who showed spontaneous viral clearance. HCV genotyping on random samples from persistently infected patients were conducted based on the differences in the 5′untranslated region (5′UTR). Anti-HCV antibodies were detected in 7.3% of the totally examined sera. A high percentage of the HCV infected individuals experienced virus clearance (48.4%). HCV genotyping revealed the presence of genotypes 1 and 4, the latter represented 97.6% of the tested strains. Evidences of the widespread of the HCV genotype 4 and a high rate of HCV virus clearance were found in Saudi Arabia.

Taif-roses are a famous rose type that cultivated in Taif region and well known with their deep and intensive fragrance in the Arabian World. Despite of the great economical importance of Taif-roses for the kingdom of Saudi Arabia, their genetic origin has not been yet elucidated. The present study was mainly aimed to assess the genetic relationship between Taif-roses and some rose genotypes that grown in some kingdom neighboring countries using molecular markers and aromatic amino acids contents. Three Taif-roses genotypes namely Hada, Shafa-1 and Shafa-2 were compared to nine different rose genotypes that are grown in Egypt and Syria. Out of 12 RAPD, 8 ISSR and 8 SSR primers used, clear and repeatable band profile of 8, 6 and 7 primers was obtained from the three markers, respectively. Total of 111, 64 and 15 bands with polymorohism of 96.4, 90.6 and 93.3% were obtained using RAPD, ISSR and SSR, respectively. The discriminating power of the three markers has led to efficient grouping of the 12 rose genotypes using Unweighted Pair Group Method (UPGMA). Among the 12 genotypes, Syrian-Gory rose shown the highest genetic similarity of 75, 92 and 65% with the three Taif-roses genotypes Hada, Shafa-1 and Shafa-2, respectively. The established dendrogram was clearly separated the 12 rose genotypes into four major groups in which the three Taif-roses genotypes were clustered in the same group with the Gory rose-Syrian genotype. Moreover, the data revealed that among the studied rose genotypes, the contents of aromatic amino acids in Syrian-Gory rose and the Taif rose-Hada was the highest and followed by the Egyptian Balady rose 1. While Dutch rose 1, 2, 3 and Dutch tulip 1, 2 were recorded to be the lowest. Together, these results indicate that Taif-rose has closed genetic relations to the Gory rose-Syrian cultivated in Syria. Additionally, a reproducible protocol for In vitro propagation, of Taif-rose genotype (Hada) was developed.

Phylogenetic and evolutionary patterns of the six internal genes of an equine H5N1 influenza A virus isolated in Egypt on 2009 were analyzed using direct sequencing. All of the internal genes of the equine H5N1 strain showed a genetic pattern potentially related to Eurasian lineages. Variable dendrogram topologies revealed an absence of reassortment in the equine strain while confirming its close relatedness to other Egyptian H5N1 strains from human and avian species. The equine strain is characterized by a variety of amino acid substitutions in six internal proteins compared to the available Egyptian H5N1 strains. Interestingly, the equine strain displayed amino acids in the PB2, PA, M2 and NS2 proteins that are unique among the available H5N1 sequences in the flu database, and their potential effect on virulence needs to be further investigated.