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Miscanthus is a perennial forage plant with great potential for high stress tolerance and biomass yield. It has strong adaptability for growing in saline land and avoids competition with grain crops in arable lands. However, little is known about the underlying genetic basis of Miscanthus adaptation to salt stress. Two diploid species of the genus Miscanthus, Miscanthus sinensis and Miscanthus sacchariflorus, were the focus of this study. The transcriptome variations of these varieties and their hybrid were analysed using RNA-seq technology under salt treatment. The number of differentially expressed genes in M. sinensis was much higher than that in M. sacchariflorus and their hybrid under salt stress, which indicated that M. sacchariflorus and their hybrid require less transcriptional variation. In addition, most salt-tolerant genes in the enriched salt-tolerant pathways were induced in the roots of M. sinensis and constitutively highly expressed in the roots of M. sacchariflorus and their hybrid under salt stress. According to this expression pattern of known salttolerant genes, a histone variant gene MsaH2A.W of M. sacchariflorus was mined and consequently proved for the first time that it could enhance the salt tolerance of transgenic Arabidopsis plants. Overall, this study provides valuable genetic resources for studying the underlying genetic basis of salt stress resistance in Miscanthus. Identification of the salt tolerance gene MsaH2A.W can promote the genetic improvement and molecular breeding of salt-resistant species.

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Lamiophlomis rotata (Benth.) Kudo is a perennial and unique medicinal plant of the Qinghai–Tibet Plateau. It has the effects of diminishing inflammation, activating blood circulation, removing blood stasis, reducing swelling, and relieving pain. However, thus far, reliable reference gene identifications have not been reported in wild L. rotata. In this study, we identified suitable reference genes for the analysis of gene expression related to the medicinal compound synthesis in wild L. rotata subjected to five different-altitude habitats. Based on the RNA-Seq data of wild L. rotata from five different regions, the stability of 15 candidate internal reference genes was analyzed using geNorm, NormFinder, BestKeeper, and RefFinder. TFIIS, EF-1α, and CYP22 were the most suitable internal reference genes in the leaves of L. rotata from different regions, while OBP, TFIIS, and CYP22 were the optimal reference genes in the roots of L. rotata. The reference genes identified here would be very useful for gene expression studies with different tissues in L. rotata from different habitats.