Twenty-seven marine sediment-and sponge-derived actinomycetes with a preference for or dependence on seawater for growth were classified at the genus level using molecular taxonomy. Their potential to produce bioactive secondary metabolites was analyzed by PCR screening for genes involved in polyketide and nonribosomal peptide antibiotic synthesis. Using microwell cultures, conditions for the production of antibacterial and antifungal compounds were identified for 15 of the 27 isolates subjected to this screening. Nine of the 15 active extracts were also active against multiresistant Gram-positive bacterial and/or fungal indicator organisms, including vancomycin-resistant Enterococcus faecium and multidrug-resistant Candida albicans. Activityguided fractionation of fermentation extracts of isolate TFS65-07, showing strong antibacterial activity and classified as a Nocardiopsis species, allowed the identification and purification of the active compound. Structure elucidation revealed this compound to be a new thiopeptide antibiotic with a rare aminoacetone moiety. The in vitro antibacterial activity of this thiopeptide, designated TP-1161, against a panel of bacterial strains was determined.

Abstract:The marine environment represents a largely untapped source for isolation of new microorganisms with potential to produce biologically active secondary metabolites. Among such microorganisms, Gram-positive actinomycete bacteria are of special interest, since they are known to produce chemically diverse compounds with a wide range of biological activities. We have set out to isolate and characterize actinomycete bacteria from the sediments in one of the largest Norwegian fjords, the Trondheim fjord, with respect to diversity and antibiotic-producing potential. Approximately 3,200 actinomycete bacteria were isolated using four different agar media from the sediment samples collected at different locations and depths (4.5 to 450 m). Grouping of the isolates first according to the morphology followed by characterization of isolates chosen as group representatives by molecular taxonomy revealed that Micromonospora was the dominating actinomycete genus isolated from the sediments. The deep water sediments contained a higher relative amount of Micromonospora compared to the shallow water samples. Nine percent of the isolates clearly required sea water for normal growth, suggesting that these strains represent obligate marine organisms. Extensive screening of the extracts from all collected isolates for antibacterial and antifungal activities revealed strong antibiotic-producing potential among them. The latter implies that actinomycetes from marine sediments in Norwegian fjords can be potential sources for the discovery of novel anti-infective agents.

BE-14106 is a macrocyclic lactam with an acyl side chain previously identified in a marine-derived Streptomyces sp. The gene cluster for BE-14106 biosynthesis was cloned from a Streptomyces strain newly isolated from marine sediments collected in the Trondheimsfjord (Norway). Bioinformatics and experimental analyses of the genes in the cluster suggested an unusual mechanism for assembly of the molecule. Biosynthesis of the aminoacyl starter apparently involves the concerted action of a distinct polyketide synthase (PKS) system and several enzymes that activate and process an amino acid. The resulting starter unit is loaded onto a second PKS complex, which completes the synthesis of the macrolactam ring. Gene inactivation experiments, enzyme assays with heterologously expressed proteins, and feeding studies supported the proposed model for the biosynthesis and provided new insights into the assembly of macrolactams with acyl side chain.

A total of 74 actinomycete isolates were cultivated from two marine sponges, Geodia barretti and Phakellia ventilabrum collected at the same spot at the bottom of the Trondheim fjord (Norway). Phylogenetic analyses of sponge-associated actinomycetes based on the 16S rRNA gene sequences demonstrated the presence of species belonging to the genera Streptomyces, Nocardiopsis, Rhodococcus, Pseudonocardia and Micromonospora. Most isolates required sea water for growth, suggesting them being adapted to the marine environment. Phylogenetic analysis of Streptomyces spp. revealed two isolates that originated from different sponges and had 99.7% identity in their 16S rRNA gene sequences, indicating that they represent very closely related strains. Sequencing, annotation, and analyses of the genomes of these Streptomyces isolates demonstrated that they are sister organisms closely related to terrestrial Streptomyces albus J1074. Unlike S. albus J1074, the two sponge streptomycetes grew and differentiated faster on the medium containing sea water. Comparative genomics revealed several genes presumably responsible for partial marine adaptation of these isolates. Genome mining targeted to secondary metabolite biosynthesis gene clusters identified several of those, which were not present in S. albus J1074, and likely to have been retained from a common ancestor, or acquired from other actinomycetes. Certain genes and gene clusters were shown to be differentially acquired or lost, supporting the hypothesis of divergent evolution of the two Streptomyces species in different sponge hosts.

Anhydrobiotic engineering aims to improve desiccation tolerance in living organisms by adopting the strategies of anhydrobiosis. This was achieved for Escherichia coli and Pseudomonas putida by osmotic induction of intracellular trehalose synthesis and by drying from trehalose solutions, resulting in long-term viability in the dried state.Organisms able to undergo anhydrobiosis survive the loss of essentially all their water, assuming metabolic dormancy in the dried state and resuming normal functions on rehydration. When dry, such organisms are highly resistant to environmental challenge (2, 7). Although bacteria exhibit variable degrees of desiccation tolerance (9), relatively few genera are recognized as anhydrobiotic, the major exceptions being among the cyanobacteria (10). The ability to confer similar desiccation tolerance on otherwise desiccation-sensitive microorganisms, termed anhydrobiotic engineering (6), has numerous potential biotechnological applications. Studies of anhydrobiosis in baker's yeast suggest that both synthesis and export of the disaccharide trehalose are of crucial importance (2, 5). Since many bacteria accumulate trehalose under certain hyperosmotic culture conditions (11), they are ideally suited for anhydrobiotic engineering. One recent study has shown that osmotically induced trehalose synthesis can increase the rate of survival of desiccation for Escherichia coli (13). In this paper, we demonstrate that when trehalose is present both inside and outside the cell, desiccation tolerance and long-term stability of both E. coli and Pseudomonas putida can be comparable to those of anhydrobiotic organisms.E. coli MC4100 was grown in M9 medium with 1% glucose and trace elements (0.015 mM FeSO 4 , 0.015 mM ZnSO 4 , and 0.015 mM MnSO 4 ), with or without osmotic stress (0.6 M NaCl), and harvested in growth and stationary phases. Intracellular trehalose was measured by gas chromatography, essentially as described previously (12); concentrations were calculated with reference to CFU. Stressed E. coli in growth phase contained the highest level of trehalose (230 g/10 9 CFU in a typical experiment), while stressed cells from stationary phase contained somewhat less (150 g/10 9 CFU). Unstressed cells from either growth phase or stationary phase did not contain detectable amounts of trehalose (Ͻ0.5 g/10 9 CFU).P. putida has been reported to accumulate mannitol as the main compatible solute (8). A study of the compatible solute profile of P. putida KT2440 grown in high-salt medium identical to that used for E. coli, except that 0.4 M NaCl was used, has demonstrated high concentrations of mannitol in early growth phase, which decrease rapidly thereafter. Trehalose is produced in high-salt cultures of P. putida, although not until