There is considerable interest in improving feed utilization of dairy cattle while limiting losses to the environment (i.e., greenhouse gases, GHG). To breed for feed-efficient or climate-friendly cattle, it is first necessary to obtain accurate estimates of genetic parameters and correlations of feed intake, greenhouse gases, and production traits. Reducing dry matter take (DMI) requirements while maintaining production has high economic value to farmers, but DMI is costly to record and thus limited to small research or nucleus herds. Conversely, enteric methane (CH 4 ) currently has no economic value, is also costly to record, and is limited to small experimental trials. However, breath gas concentrations of methane (CH 4 c) and carbon dioxide (CO 2 c) are relatively cheap to measure at high throughput under commercial conditions by installing sniffers in automated milking stations. The objective of this study was to assess the genetic correlations between DMI, body weight (BW), fat-and protein-corrected milk yield (FPCM), and GHG-related traits: CH 4 c and CO 2 c from Denmark (DNK) and the Netherlands (NLD). A second objective was to assess the genetic potential for improving feed efficiency and the added benefits of using CH 4 c and CO 2 c as indicators. Feed intake data were available on 703 primiparous cows in DNK and 524 in NLD; CH 4 c and CO 2 c records were available on 434 primiparous cows in DNK and 656 in NLD. The GHG-related traits were heritable (e.g., CH 4 c h 2 : DNK = 0.26, NLD = 0.15) but were differentially genetically correlated with DMI and feed efficiency in both magnitude and sign, depending on the population and the definition of feed efficiency. Across feed efficiency traits and DMI, having bulls with 100 daughters with FPCM, BW, and GHG traits resulted in sufficiently high accuracy to almost negate the need for DMI records. Despite differences in genetic correlation structure, the relatively cheap GHG-related traits showed considerable potential for improving the accuracy of breeding values of highly valuable feed intake and feed efficiency traits.

Substantial evidence demonstrates that the genetic background of milk production traits changes during lactation. However, most GWAS for milk production traits assume that genetic effects are constant during lactation and therefore might miss those quantitative trait loci (QTL) whose effects change during lactation. The GWAS for genotype by lactation stage interaction are aimed at explicitly detecting the QTL whose effects change during lactation. The purpose of this study was to perform GWAS for genotype by lactation stage interaction for milk yield, lactose yield, lactose content, fat yield, fat content, protein yield, and somatic cell score to detect QTL with changing effects during lactation. For this study, 19,286 test-day records of 1,800 first-parity Dutch Holstein cows were available and cows were genotyped using a 50K SNP panel. A total of 7 genomic regions with effects that change during lactation were detected in the GWAS for genotype by lactation stage interaction. Two regions on Bos taurus autosome (BTA)14 and BTA19 were also significant based on a GWAS that assumed constant genetic effects during lactation. Five regions on BTA4, BTA10, BTA11, BTA16, and BTA23 were only significant in the GWAS for genotype by lactation stage interaction. The biological mechanisms that cause these changes in genetic effects are still unknown, but negative energy balance and effects of pregnancy may play a role. These findings increase our understanding of the genetic background of lactation and may contribute to the development of better management indicators based on milk composition.

Fourier transform infrared spectral analysis is a cheap and fast method to predict milk composition. A not very well studied milk component is orotic acid. Orotic acid is an intermediate in the biosynthesis pathway of pyrimidine nucleotides and is an indicator for the metabolic cattle disorder deficiency of uridine monophosphate synthase. The function of orotic acid in milk and its effect on calf health, health of humans consuming milk or milk products, manufacturing properties of milk, and its potential as an indicator trait are largely unknown. The aims of this study were to determine if milk orotic acid can be predicted from infrared milk spectra and to perform a large-scale phenotypic and genetic analysis of infrared-predicted milk orotic acid. An infrared prediction model for orotic acid was built using a training population of 292 Danish Holstein and 299 Danish Jersey cows, and a validation population of 381 Danish Holstein cows. Milk orotic acid concentration was determined with nuclear magnetic resonance spectroscopy. For genetic analysis of infrared orotic acid, 3 study populations were used: 3,210 Danish Holstein cows, 3,360 Danish Jersey cows, and 1,349 Dutch Holstein Friesian cows. Using partial least square regression, a prediction model for orotic acid was built with 18 latent variables. The error of the prediction for the infrared model varied from 1.0 to 3.2 mg/L, and the accuracy varied from 0.68 to 0.86. Heritability of infrared orotic acid predicted with the standardized prediction model was 0.18 for Danish Holstein, 0.09 for Danish Jersey, and 0.37 for Dutch Holstein Friesian. We conclude that milk orotic acid can be predicted with moderate to good accuracy based on infrared milk spectra and that infrared-predicted orotic acid is heritable. The availability of a cheap and fast method to predict milk orotic acid opens up possibilities to study the largely unknown functions of milk orotic acid.

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Changes in milk production traits over time might be informative of the health status of cows and may contain useful information for selective breeding purposes. In particular, early indicators are useful for traits such as longevity, which become available late in the cow's life. Lactose percentage (LP) tends to decrease in the presence of udder infection and with parity. Therefore, it can be hypothesized that cows exhibiting limited changes in LP across lactations have experienced fewer udder infections in their productive life and have a higher chance to stay longer in the herd than cows with more pronounced reduction of LP across lactations. In this study, 9 descriptors of change in LP during a cow's lifetime were defined and evaluated as potential indicators for selective breeding. For the purpose of this study, test-day records of the first 44 days in milk (DIM) of each lactation were discarded, and cows were required to have at least 5 test-days/cow per lactation (≥45 DIM) over the first 3 lactations. In this study, descriptors of LP were available for 69,586 Italian Holstein cows. Changes in LP in each lactation were quantified by regressing LP on DIM; thus, β 1 , β 2 , and β 3 represented the changes in LP within lactations 1, 2, and 3, respectively. Changes in LP across multiple lactations were also quantified by regressing LP on DIM (with exclusion of the first 44 DIM of each lactation); briefly, β 12 was the change of LP over lactation 1 and 2, β 23 was the change of LP over lactation 2 and 3, and β 123 was the change of LP over lactation 1, 2, and 3. Alternatively, changes in the LP lactation means (Δ) were quantified between lactations 1 and 2 (Δ 12 ), 2 and 3 (Δ 23 ), and 1 and 3 (Δ 13 ). For comparison, β and Δ were also derived for milk yield (kg/d), somatic cell score, and log-transformed total somatic cells excreted daily in milk (units). Variance components and esti-mated breeding values (EBV) for all β's and Δ's were estimated. In addition, EBV for bulls with at least 25 daughters were used to assess Calo's genetic correlations between descriptors of change in LP with official published EBV for functional traits. Heritabilities for β and Δ of LP ranged from 0.06 (Δ 23 ) to 0.20 (Δ 13 ), and differed significantly from 0. Furthermore, LP EBV for β and Δ were correlated with official EBV for functional longevity index, udder health index, udder score (mammary gland morphology) index, and milk persistency; Calo's genetic correlations of LP β 123 with functional longevity and udder health index were 0.52 and 0.33, respectively. Cows with a stronger reduction of LP across lactations (i.e., stronger and negative β, and greater and positive Δ) were characterized by lower milk persistency, impaired longevity, and worse udder health and morphology than cows with smaller reduction in LP across lactations. Results highlighted that changes in milk LP have the potential to be exploited as indicators for functional traits in Italian Holstein cattle. Further research on the biological relationship between c...