The mean flow profile within and above a tall canopy is well known to violate the standard boundary-layer flux-gradient relationships. Here we present a theory for the flow profile that is comprised of a canopy model coupled to a modified surface-layer model. The coupling between the two components and the modifications to the surface-layer profiles are formulated through the mixing layer analogy for the flow at a canopy top. This analogy provides an additional length scale-the vorticity thickness-upon which the flow just above the canopy, within the so-called roughness sublayer, depends. A natural form for the vertical profiles within the roughness sublayer follows that overcomes problems with many earlier forms in the literature. Predictions of the mean flow profiles are shown to match observations over a range of canopy types and stabilities.The unified theory predicts that key parameters, such as the displacement height and roughness length, have a significant dependence on the boundary-layer stability. Assuming one of these parameters a priori leads to the incorrect variation with stability of the others and incorrect predictions of the mean wind speed profile. The roughness sublayer has a greater impact on the mean wind speed in stable than unstable conditions. The presence of a roughness sublayer also allows the surface to exert a greater drag on the boundary layer for an equivalent value of the near-surface wind speed than would otherwise occur. This characteristic would alter predictions of the evolution of the boundary layer and surface states if included within numerical weather prediction models.

Forest canopies are important components of the terrestrial carbon budget, which has motivated a worldwide effort, FLUXNET, to measure CO2 exchange between forests and the atmosphere. These measurements are difficult to interpret and to scale up to estimate exchange across a landscape. Here we review the effects of complex terrain on the mean flow, turbulence, and scalar exchange in canopy flows, as exemplified by adjustment to forest edges and hills, including the effects of stable stratification. We focus on the fundamental fluid mechanics, in which developments in theory, measurements, and modeling, particularly through large-eddy simulation, are identifying important processes and providing scaling arguments. These developments set the stage for the development of predictive models that can be used in combination with measurements to estimate exchange at the landscape scale.

Abstract. Land surface models used in climate models neglect the roughness sublayer and parameterize within-canopy turbulence in an ad hoc manner. We implemented a roughness sublayer turbulence parameterization in a multilayer canopy model (CLM-ml v0) to test if this theory provides a tractable parameterization extending from the ground through the canopy and the roughness sublayer. We compared the canopy model with the Community Land Model (CLM4.5) at seven forest, two grassland, and three cropland AmeriFlux sites over a range of canopy heights, leaf area indexes, and climates. CLM4.5 has pronounced biases during summer months at forest sites in midday latent heat flux, sensible heat flux, gross primary production, nighttime friction velocity, and the radiative temperature diurnal range. The new canopy model reduces these biases by introducing new physics. Advances in modeling stomatal conductance and canopy physiology beyond what is in CLM4.5 substantially improve model performance at the forest sites. The signature of the roughness sublayer is most evident in nighttime friction velocity and the diurnal cycle of radiative temperature, but is also seen in sensible heat flux. Within-canopy temperature profiles are markedly different compared with profiles obtained using Monin–Obukhov similarity theory, and the roughness sublayer produces cooler daytime and warmer nighttime temperatures. The herbaceous sites also show model improvements, but the improvements are related less systematically to the roughness sublayer parameterization in these canopies. The multilayer canopy with the roughness sublayer turbulence improves simulations compared with CLM4.5 while also advancing the theoretical basis for surface flux parameterizations.

Turbulence above and within canopies has characteristics distinct from that over rough surfaces. The vertical transport of momentum and scalars is dominated by coherent structures whose origin is now thought to be the result of the unstable inflexion in the profile of the mean wind speed established by the application of canopy drag. This distinctive property leads to the failure of the standard Monin-Obukhov flux-profile relationships over homogeneous canopies, relationships that are assumed in many surface exchange schemes within numerical weather prediction and general circulation models. A modification of the flux-profile relationships is presented that incorporates the effects of the canopy turbulence. The subsequent impacts on the evolution of the surface energy balance and boundary-layer state are investigated within a simple numerical model for the evolution of the boundary layer and canopy state. By comparing cases with and without the modification it is shown that canopy-generated turbulence can lead, not only to the alteration of the flux-profile relationships above the canopy, but also to a different evolution of the surface energy balance and differences in near-surface conditions that would be significant in numerical weather prediction. More fundamentally, the modifications to the flux-profile relationships imply that parameters such as the roughness length and displacement height for canopies should not be considered as invariant properties, but rather as properties that depend on the flow and hence vary systematically with the diabatic stability of the boundary layer.